PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015712
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 319aa    MW: 36131.4 Da    PI: 8.5376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015712genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd++l+  v+++G g+W+t + + g+ R++k+c++rw +yl
      Lus10015712  9 RGPWSSEEDQKLLSFVQLHGHGSWRTLPPKAGLQRCGKSCRLRWINYL 56
                     89********************************************97 PP
2Myb_DNA-binding54.23.4e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
      Lus10015712  62 RGKFSLHEEQTIIQLHALLGNR-WSAIAAHLP-RRTDNEIKNHWNTHL 107
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.589456IPR017930Myb domain
SuperFamilySSF466892.4E-296103IPR009057Homeodomain-like
SMARTSM007171.8E-11858IPR001005SANT/Myb domain
PfamPF002497.7E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-211063IPR009057Homeodomain-like
CDDcd001674.92E-91156No hitNo description
PROSITE profilePS5129425.58357111IPR017930Myb domain
SMARTSM007172.3E-1661109IPR001005SANT/Myb domain
PfamPF002491.1E-1562107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2664111IPR009057Homeodomain-like
CDDcd001673.91E-1164107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDISVGLRRG PWSSEEDQKL LSFVQLHGHG SWRTLPPKAG LQRCGKSCRL RWINYLRPGI  60
KRGKFSLHEE QTIIQLHALL GNRWSAIAAH LPRRTDNEIK NHWNTHLKKR LSLMGIDPAT  120
HKSKTATLRR LDGGDPKNAS TLSHMAQWES ARLEAEARLV RESNLLRDHH QQQPNPAMQH  180
HHDQALLNKM ASSSRLAPPR CLDVLRVWQN QHNNFQGHDG HHHDNNIYAW HSSSSPPWPR  240
LMESTLLDGD GTSTTSSGTR GINLVGKSVA QVISNDEEAG DALFVDYWIR DDDGDQLVDL  300
QVDWNSTSWT AMDRTNDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2671115108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015712
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022755508.19e-98transcription factor MYB16-like
SwissprotQ9LE632e-87MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2H5PT872e-96A0A2H5PT87_CITUN; Uncharacterized protein
STRINGLus100157120.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.18e-89myb domain protein 106