PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015266
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 1628aa    MW: 182773 Da    PI: 8.0458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015266genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.1e-1225109896
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    v+ s+ l +p +f++ehg+   ++k+++l+ +sg +W vk+ ++k+ g++++ +GW+eF++   +     + F+++g+ +f  +v +
  Lus10015266  25 DPVHDSK-LQIPDTFVAEHGSRLSKKKKVVLKLPSGAEWLVKVAISKG-GKMWFDEGWREFAEFYTIAPDHLLAFEYHGHGNF--HVFI 109
                  4555554.99*********88888899****************55554.4589************************987777..6655 PP
2B345.11.7e-14222320398
                  EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-.SS.SEE..EEE CS
           B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk.ld.gr.sefelvvk 95 
                  kv+ ps+ ++  + l l  +f+ e+ +   +s ++ l  + g++Wev++++  kk+ +++ +k W  F+++ngLk gD++ F+ l+ g+ ++ +l+v 
  Lus10015266 222 KVMQPSYLTNGsKPLFLRSSFFLENFKH--KSGDIFLHVLGGKTWEVQYNVyVKKKAAVFKAKTWGAFARDNGLKIGDVCAFEvLKkGEtEKPTLNVA 317
                  4555555444445689999999999755..4558***************6636666668888*********************533455566666777 PP

                  EE- CS
           B3  96 vfr 98 
                  +fr
  Lus10015266 318 IFR 320
                  776 PP
3B335.61.6e-11441525186
                  EEEE-..-HHHHTT-E..E--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE.E-S CS
           B3   1 ffkvltpsdvlksgrl..vlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgr.yvltkGWkeFvkangLkegDfvvFk.ldg 86 
                  ffkv ++  +l+++ +  ++p +f ++ +   e + +l     +g +W vk+ +y++++++  ++++GWk+Fv+an Lk gD+++F+ l+g
  Lus10015266 441 FFKVVMSRAHLSKSFVvgMIPAEFHKHVN---EAKAELW---FKGLRWGVKIaNYTGGRNArKIISTGWKSFVNANTLKNGDVCIFEsLKG 525
                  67777777777776444567777763333...3333555...5679999999444444444588999*******************94444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1612110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1714111IPR015300DNA-binding pseudobarrel domain
CDDcd100177.53E-716110No hitNo description
PROSITE profilePS5086311.67417113IPR003340B3 DNA binding domain
SMARTSM010192.1E-718113IPR003340B3 DNA binding domain
PfamPF023624.1E-928108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-18212322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16213321IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-12218320No hitNo description
SMARTSM010191.3E-10220322IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533221322IPR003340B3 DNA binding domain
PfamPF023621.1E-11222321IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-11434524IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-11437523IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-8440521No hitNo description
PfamPF023624.3E-9441525IPR003340B3 DNA binding domain
SMARTSM010190.0057442531IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828478542IPR003340B3 DNA binding domain
PfamPF056414.2E-5539604IPR008395Agenet-like domain
SMARTSM007430.0032612670IPR014002Agenet domain, plant type
PfamPF161352.3E-1311451213IPR032308Jas TPL-binding domain
SuperFamilySSF579039.46E-1412441307IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.2E-1612481309IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.75712621307IPR019787Zinc finger, PHD-finger
SMARTSM002495.7E-1012641305IPR001965Zinc finger, PHD-type
CDDcd155321.89E-1412641304No hitNo description
PfamPF006281.5E-712651306IPR019787Zinc finger, PHD-finger
SMARTSM002490.8913061365IPR001965Zinc finger, PHD-type
Gene3DG3DSA:3.30.40.103.2E-413101364IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5118610.50814251570IPR000182GNAT domain
Gene3DG3DSA:3.40.630.301.8E-914511569IPR016181Acyl-CoA N-acyltransferase
SuperFamilySSF557291.48E-914561548IPR016181Acyl-CoA N-acyltransferase
CDDcd043016.85E-414651525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008080Molecular FunctionN-acetyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1628 aa     Download sequence    Send to blast
MAEEKGAGGW PKLKNPRFYT SILNDPVHDS KLQIPDTFVA EHGSRLSKKK KVVLKLPSGA  60
EWLVKVAISK GGKMWFDEGW REFAEFYTIA PDHLLAFEYH GHGNFHVFIF TEIVYRTHLQ  120
EPDVHVKLEY GADSYAESLP FSPKTRDKTP LESLQPPPSK LRRTTLNTDR RLGEYLGDEG  180
LNRDLGGASQ KRKLIRFAGE KETSCLARAT AAFKSENPFI MKVMQPSYLT NGSKPLFLRS  240
SFFLENFKHK SGDIFLHVLG GKTWEVQYNV YVKKKAAVFK AKTWGAFARD NGLKIGDVCA  300
FEVLKKGETE KPTLNVAIFR ADQGIDRDVH PPDESKLKSA LLLSDREGSE GRSSRGFQNA  360
PNEVKLTIGN RSLAVTCGDE DRSGNGVLNK VEIFVLAGNL QSLTTLCINP YTGNSRKQSN  420
LVLQSCGGLE AANAFTSDLP FFKVVMSRAH LSKSFVVGMI PAEFHKHVNE AKAELWFKGL  480
RWGVKIANYT GGRNARKIIS TGWKSFVNAN TLKNGDVCIF ESLKGEADDG GSRRMTDMVR  540
SEDEGFEGSW HEGTVSGRRK IGSSAEFEIE LDHFLDVDVV TVSLVVSDDE QLSSTRGYIR  600
PFPPEFTTIN EYMLPFGLCV DVNCNDKGWW EGVVFDYEDG SNQRKVFFPD IGIEIVVPVG  660
ELRITQDWDE VSGKWNHRGM WLFLDLIEEY TGKGGRIPVS IKQLWYDLRH KKGFWNIGGG  720
DWTCSSRPVW EELVSDVVRC NLELVSDRLF NELSLPDGAR KLSELAKSVN SVTDNADSES  780
MLQQLMLTEK STPERDELLA EVVQMTSLSG EIVEAVSSSS VMEIESCDFD QAKNSSSHGR  840
SDSKLPQPLL IENSVPEGDE VSTYSAMETE RCDLLTPSLR KNQKFRWLPA GPDMVQEPKY  900
CPEAIVKYAQ GSGEMVAKAK QHLLYLEWSI QYYMDEYKRP RFHFISPDGK CYYSLKQVCR  960
ILVNSEDKKN PLSDSRYECP KAIVDCYKVS CAGGASKNSD VIKRAKENLK AMGWSIEEKL  1020
LGNGRRVKVY KSPRGQSYTS LRMACQSCMN ETDTSVASKP IKLQRKSSRP SGDIRRGQRG  1080
KTHQTGAQPD GIVKLRTPLP KSVSRKTAEI YSRLADMKRL TQPKHLRSSK RVKLTPKKSS  1140
GGDPLTMVSW LIDNNTIFPR EKVYYRTSKD GDDGDSKPKG RITREGIKCF CCMKVFSLSS  1200
FELHVGNKYY RNYHHGPSSS LFLADGRSLS DCQVQVMRQG KEMSLKSQPL KRLKGRHEGE  1260
NDEVCSVCQY GGELILCDQC PSSFHGGCLG MQDVPGGDWF CPSCCCRTCK RKQVLKDSES  1320
FLDESILKCT QCEYSYHITC LKKNGVKNRY LGHKEGNWFC GKNCKRIFAD LSAHLRIPIP  1380
TGVDDLTCTL QKSVSESDGR TEFSEASDIE AEAQSYAKLG IALHVIHECF EPLEESSTGR  1440
DVVSDVIFSQ RSEIRRLDFR GFYTVLLEKD DEVISVATIR IFGDKVAEVP LVATRHQYRQ  1500
RGMCRILMYV IEKKLTELGV ERLVLPAVPS MLNTWTGSFG FSKVTDSERL QFVDPIFLNF  1560
PGTIMCHKLL TTNESSPLKK EIPSLPFHGN SGKGEEMELQ LDGSPSLESE VVQAEKTEQQ  1620
QGAPLTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100152660.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-20B3 family protein