PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015098
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 373aa    MW: 41107.3 Da    PI: 5.2658
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015098genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.12.3e-05244339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 e+ C+ ++  ++  +C+++   lC +C    H+       H++
  Lus10015098  2 EPLCEFCNVVNAVVYCKSDLARLCLQCDGLVHSAnslsrrHQR 44
                 689******99****************9999955667777765 PP
2CCT60.74.9e-21316359144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a++RY eK++tR F K+irY+sRK++A++R+RvKGrFvk+ 
  Lus10015098 316 RFLAKMRYMEKKRTRSFGKQIRYASRKERADTRKRVKGRFVKAG 359
                  56689************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501198.646147IPR000315B-box-type zinc finger
CDDcd000214.77E-4347No hitNo description
PROSITE profilePS5101714.148316358IPR010402CCT domain
PfamPF062038.8E-16318358IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEPLCEFCNV VNAVVYCKSD LARLCLQCDG LVHSANSLSR RHQRSLLCDK CNSQPASAMC  60
LDEKLSVCQW CDCSSANGCS SLGHRLHVLN YYTGCPSSSE FMGLWSSVLE FPTLSVTSCL  120
DERANEPWME PPPPMIPPNV SYISYDRDQA PFPTVESDLP KGCSVVEDLG LCDHEYLCEG  180
HNIEDVQLSL EHSDEIFGFE DVGKECSTIE SNLSFKESKI GLIENVIEPS HVAGLNNLMP  240
AVSGGTTNYF YMNPNCNRNI SSLGFPSGTA AKVHSSISLS MSGESSVADY QDCVLSPAFL  300
SDKSPWESNT GGSQARFLAK MRYMEKKRTR SFGKQIRYAS RKERADTRKR VKGRFVKAGE  360
AFDYGSLPTS DF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675842.11e-132putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A3N7GRW21e-127A0A3N7GRW2_POPTR; Uncharacterized protein
STRINGLus100150980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.16e-79B-box type zinc finger protein with CCT domain