PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014822
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 497aa    MW: 55449 Da    PI: 8.0173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014822genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.63.8e-921074941374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl  A+a+++g+ + a + La l   +s  gd++qR++a f+ +L+arl+   s  y+ +  ++t+    +ee+ a++ +++vsP+++f+h+ta
  Lus10014822 107 LIHLLLITATAIDEGNSNSALENLADLYRSVSLVGDSVQRVVAQFADGLSARLLTRKSPFYEMIMKRPTA----EEEFLAFTDLYKVSPCYQFAHFTA 200
                  689****************************************************9*****999999997....678888899*************** PP

         GRAS  99 NqaIleavegeerv.....HiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  Nq I+ea+e+ee+v     H++Dfd+s+GlQWp+L+q++++R+  ++  slR+Tg+++    s ee++et++rL +fA+ + ++ fef+ l    l  
  Lus10014822 201 NQSIVEAFEREETVngralHVVDFDVSYGLQWPSLIQSISDRAtaSNRISLRVTGFSR----SLEEMRETESRLVSFAKGFrNLVFEFQGL----LRG 290
                  ***********66666666************************656666*********....9****************9758*******8....666 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   +l +Lr +++E++aVnlv++l +l d s +++    ++Lk ++ l+P vvv+ve+e  +ns+ Fl rf+e+l+y++a+fdsl+  lp es er  +E
  Lus10014822 291 SKLVNLRKRKNETVAVNLVFHLNTLADAS-AVS----NTLKSINALNPSVVVLVEHEGYRNSKMFLPRFMESLHYFAAMFDSLDDCLPLESPERLRIE 383
                  67789*******************98333.333....58*********************************************************** PP

         GRAS 287 rellgreivnvvacegaerre.........rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.............eesgslv.lg 361
                  + llg+ei+ ++ c +++r           r e++e+W+ r+e  GF+ ++ls+++  qaklll+  +  g +v              +++g ++ lg
  Lus10014822 384 KNLLGNEIKTILNCDKDRRHSdsknhgpllRYEKVESWKGRMEGHGFRGLKLSSSTLIQAKLLLKIRAHYGPTVGdaddvgggfrvfqKDDGKAIsLG 481
                  *****************99864444455557899******************************98887776666443333443333455888888** PP

         GRAS 362 WkdrpLvsvSaWr 374
                  W+dr L+++SaW+
  Lus10014822 482 WQDRCLLTASAWT 494
                  ************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.20681460IPR005202Transcription factor GRAS
PfamPF035141.3E-89107494IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEDLLEGDAL NLSLSIINTI PTYPGDRQTI GPAKRKRSAP LSTSSSSVDV FPTGSPNRNG  60
LFEAKIFRLL QMRDSIMNRT DLNRKSAPLL TTDDDDYGDS GNKGLHLIHL LLITATAIDE  120
GNSNSALENL ADLYRSVSLV GDSVQRVVAQ FADGLSARLL TRKSPFYEMI MKRPTAEEEF  180
LAFTDLYKVS PCYQFAHFTA NQSIVEAFER EETVNGRALH VVDFDVSYGL QWPSLIQSIS  240
DRATASNRIS LRVTGFSRSL EEMRETESRL VSFAKGFRNL VFEFQGLLRG SKLVNLRKRK  300
NETVAVNLVF HLNTLADASA VSNTLKSINA LNPSVVVLVE HEGYRNSKMF LPRFMESLHY  360
FAAMFDSLDD CLPLESPERL RIEKNLLGNE IKTILNCDKD RRHSDSKNHG PLLRYEKVES  420
WKGRMEGHGF RGLKLSSSTL IQAKLLLKIR AHYGPTVGDA DDVGGGFRVF QKDDGKAISL  480
GWQDRCLLTA SAWTSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-5511449425378Protein SCARECROW
5b3h_D6e-5511449425378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014822
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199010.20.0scarecrow-like protein 21
TrEMBLM5VGL50.0M5VGL5_PRUPE; Uncharacterized protein
STRINGLus100148220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-54GRAS family protein