PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10014807

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 465aa MW: 48781 Da PI: 6.7487

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10014807	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00066	370	388	36	54
S-STCHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksL 54 K + a++L +A+eYIk L Lus10014807 370 FKTDTASVLSEAIEYIKFL 388 58999************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.0E-5	368	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-6	370	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MADEFNTSSI NWWDSTSRTT DGGAAAGTAS SSSAGGGGCF SWAVTPDMSD AVKSGGGGGG 60 GGGRSSLDSV SVSTTADNSS AADHIHMMGL GLSSHAMDWN QALLRGEKGT DHHHHHQHQS 120 SFRSMLQIEN LNSTPPSYNE PGGGGGAGGG LWRERSTSSV YSSENSNSIN EFKQIARGFS 180 LDQPAAVHDF CHLNPPDTSG ATGFQLGSGG GGMFQGGGGE LLGSEPNHVL NHYAPSYGGG 240 GSISTSTGND LSSGNWSSSN NKVPQFLRSN SPPPKHSQLH FSNNAPFWNA SGAMTTDVRP 300 PGGGSFPQSS PQQHHHFPAA ASTFDDKPPK MQNIGEERNS SALVVVKKSE GGGTNKRSRN 360 ETAASTLPAF KTDTASVLSE AIEYIKFLHD QISVLSTPYM KSGAPIHHQQ QSCDHHHQKL 420 KDTAEAQKEL RSRGLCLVPV SSTFPVTHET TVDFWTPTFG GTFR*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MADEFNTSSI NWWDSTSRTT DGGAAAGTAS SSSAGGGGCF SWAVTPDMSD AVKSGGGGGG  60
GGGRSSLDSV SVSTTADNSS AADHIHMMGL GLSSHAMDWN QALLRGEKGT DHHHHHQHQS  120
SFRSMLQIEN LNSTPPSYNE PGGGGGAGGG LWRERSTSSV YSSENSNSIN EFKQIARGFS  180
LDQPAAVHDF CHLNPPDTSG ATGFQLGSGG GGMFQGGGGE LLGSEPNHVL NHYAPSYGGG  240
GSISTSTGND LSSGNWSSSN NKVPQFLRSN SPPPKHSQLH FSNNAPFWNA SGAMTTDVRP  300
PGGGSFPQSS PQQHHHFPAA ASTFDDKPPK MQNIGEERNS SALVVVKKSE GGGTNKRSRN  360
ETAASTLPAF KTDTASVLSE AIEYIKFLHD QISVLSTPYM KSGAPIHHQQ QSCDHHHQKL  420
KDTAEAQKEL RSRGLCLVPV SSTFPVTHET TVDFWTPTFG GTFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10014807

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593920.1	1e-103	transcription factor bHLH123-like isoform X1
TrEMBL	A0A2C9UDY7	1e-102	A0A2C9UDY7_MANES; Uncharacterized protein
STRING	Lus10014807	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10014807