PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10014757 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 26497.6 Da PI: 7.4137 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.5 | 1e-38 | 22 | 122 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa+dC++apyf++eq p +fa+vhk+FGasnv+kll +lp +r +a+ ++++eA+ar+rdPv+G+v++i++lq+q++ l+a+l++l Lus10014757 22 PCGACKFLRRKCAADCIFAPYFCSEQgPTRFAAVHKVFGASNVSKLLLHLPAADRCEAVVTITFEAQARLRDPVHGCVSHIFSLQHQVAYLQAQLVQL 119 7*************************99********************************************************************99 PP DUF260 98 kee 100 k++ Lus10014757 120 KSQ 122 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.131 | 21 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-37 | 22 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MASYSGNSTT TTSSSGGGTG SPCGACKFLR RKCAADCIFA PYFCSEQGPT RFAAVHKVFG 60 ASNVSKLLLH LPAADRCEAV VTITFEAQAR LRDPVHGCVS HIFSLQHQVA YLQAQLVQLK 120 SQMAAQNGSN DTNTAPLIGC REANYSHPTP YDNSYSFNPP PQQTAVSSPE GSPESVEYGG 180 GSSVTPAGHL LQQMMIRCRE EASMLEQQNY SSSSYGQWTS SKKRPYDSVE LGDLQALALR 240 MMGTYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-34 | 18 | 116 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-34 | 18 | 116 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10014757 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002521022.1 | 3e-76 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 4e-66 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | B9S4L6 | 6e-75 | B9S4L6_RICCO; LOB domain-containing protein, putative | ||||
STRING | Lus10014757 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-50 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Lus10014757 |