PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014528
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 407aa    MW: 45945 Da    PI: 9.6586
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014528genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.67.1e-1116101893
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  +  lk+grl+l+ +f++e+g+    s ++tl+ ++g++W++ l      + +r++l++G  +F +   + +g  ++F++ g+s+f+ +
  Lus10014528  16 PEDLKQGRLRLSGEFVKEYGHL--LSDEVTLKVRDGKVWKIGLAKqlGCREERIWLKAGFGRFLEHYSIGVGYLLIFEFRGSSRFQAF 101
                  6678999************966..8889***************6653333445*************************9988888654 PP
2B334.43.8e-11304393689
                  ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS......-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg......rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  ++ +  +sg+++lp + +++  + k    ++++l+  +g       + ev+l  rk+++r   ++  GW +F+k+++L +gD+++F+l++ + 
  Lus10014528 304 ITTSQANSGNMSLPIRITADGyMRK--DLQKIMLRVFDGeermvlDQREVNLFERKGKERgkKYI-CGWMSFCKDHRLVTGDICLFELVEPEA 393
                  4455566677****99985554333..44578888888888999988888885555555564444.59*******************987444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-156108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-167108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-98104No hitNo description
PROSITE profilePS508639.79106IPR003340B3 DNA binding domain
SMARTSM010195.1E-610109IPR003340B3 DNA binding domain
PfamPF023625.0E-816101IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-12294400IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-11294402IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.572299404IPR003340B3 DNA binding domain
SMARTSM010190.0051300402IPR003340B3 DNA binding domain
CDDcd100173.85E-7300401No hitNo description
PfamPF023621.1E-8304392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAFNDLPKIF WQIIYPEDLK QGRLRLSGEF VKEYGHLLSD EVTLKVRDGK VWKIGLAKQL  60
GCREERIWLK AGFGRFLEHY SIGVGYLLIF EFRGSSRFQA FVFDLTACEI VYPISSSHDS  120
DSDSNFDFDN PGLRHGNRGK GVVSTAVGEN GGNASGSRQQ RQQGRPCAAL DIDDSDSDSS  180
ESDPDFCSPD FRARNRGKQA VPAKRNGGNA SSSRPPNAAG ASFTDAGNFE KLSRTKKRLR  240
TNFKGDSFFC VCAEELWRRV ERSTIIKTKG FRSRLVNLPE ASQRAISRAF DIRNPKNPSF  300
LVDITTSQAN SGNMSLPIRI TADGYMRKDL QKIMLRVFDG EERMVLDQRE VNLFERKGKE  360
RGKKYICGWM SFCKDHRLVT GDICLFELVE PEANLFDVRK FHARRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100145280.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-19B3 family protein