PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014453
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 306aa    MW: 34565.6 Da    PI: 9.0532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014453genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.8e-202673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+d+vk++G g+W++++r  g++R +k+c++rw +yl
      Lus10014453 26 KGPWTAEEDKLLIDYVKLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 73
                     79********************************************97 PP
2Myb_DNA-binding51.62.2e-1679123147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++v++++++G++ W+tIar ++ gRt +++k++w+++
      Lus10014453  79 RGQITPQEETIIVELHARWGNR-WSTIARSLP-GRTNNEIKNYWRTH 123
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0852173IPR017930Myb domain
SuperFamilySSF466894.03E-3023120IPR009057Homeodomain-like
SMARTSM007171.2E-162575IPR001005SANT/Myb domain
PfamPF002499.1E-182673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-232780IPR009057Homeodomain-like
CDDcd001674.96E-122873No hitNo description
PROSITE profilePS5129423.39774128IPR017930Myb domain
SMARTSM007171.1E-1378126IPR001005SANT/Myb domain
PfamPF002491.0E-1379123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2381127IPR009057Homeodomain-like
CDDcd001672.68E-983124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSWGVMSGDL GWGSSTVVVE EVGWRKGPWT AEEDKLLIDY VKLHGEGRWN SVSRLAGLKR  60
NGKSCRLRWV NYLRPDLKRG QITPQEETII VELHARWGNR WSTIARSLPG RTNNEIKNYW  120
RTHFKKKTKP APSAAAAADT SDKARNRLLK RQHFHQQQKE QQQIMQSQEQ QQHQQLLWQL  180
NQLDIKKIMS LLLDDNEYSA NNNNNHNMAQ FSGRQEVDPT SDAATNSENS TIYPNQEHHG  240
GYYANGICPY SSSSLMAPAE ANQEILSTPW VDGLWSLEHL HAAGRAATTT TTTSSSISNL  300
VAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252612827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014453
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311700.15e-95transcription factor MYB2
TrEMBLA0A2P5FAR51e-95A0A2P5FAR5_TREOI; MYB transcription factor
STRINGLus100144530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-68myb domain protein 305