PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014423
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family E2F/DP
Protein Properties Length: 364aa    MW: 38933.2 Da    PI: 7.8021
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014423genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.96.2e-2799186271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+++ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  Lus10014423  99 SGRGLRQFSMK---VCEKVQSkGTTTYNEVADELVAEfadpgggaaaaagsdqvvpqfDEKNIRRRVYDALNVLMALDIISK-DKKEIHWKG 186
                  689********...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.2E-1201363IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.8E-4294192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.1E-3398186IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-24100186IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-19101187IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144589.12E-40191294IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.11E-39193312No hitNo description
SMARTSM011383.0E-61193361IPR014889Transcription factor DP, C-terminal
PfamPF087811.5E-38194320IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MATGGGAHQD DVEKSLSAAS ARTRSWGTAT ASGGGGGCGG QSVSTSGSVG SPSNAATPAS  60
DSTYLRLNNL DIHADDAATQ DAANKKKKRG QRAVGADKSG RGLRQFSMKV CEKVQSKGTT  120
TYNEVADELV AEFADPGGGA AAAAGSDQVV PQFDEKNIRR RVYDALNVLM ALDIISKDKK  180
EIHWKGLPRT SQSDVEEMKS EKVSIRNRNE KKAQYLKEME DQYVGLQNLI QRNNQLYSSG  240
NAPSGGVSLP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNYV LKAMKLGERP  300
PHNNGSAPNM VASGSSMNHH HDQQQQFIPP PVTQNTPVRA TAAAAATSPP IPGIIKSRSR  360
NEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3792191193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014423
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021669096.11e-165transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-139DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A067JYW61e-160A0A067JYW6_JATCU; Uncharacterized protein
STRINGLus100144230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-131Transcription factor DP