PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014359
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 268aa    MW: 30599 Da    PI: 7.5357
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014359genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.9e-1220122298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-...........TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt...........kGWkeFvkangLkegDfvvFkldgrs 88 
                  fkv + + + + +rl +p +f+e+hg     s  +tl+ + g +W++ l ++ +s ++  t           + W +F++   Lk g ++vF+++g s
  Lus10014359  20 FKVIL-EETITDKRLAIPETFVEKHGAA--LSSPVTLKLPGGTTWKIDLLIEICSTSTSTTsanenrfwlwnETWHKFAQHYSLKHGHSLVFQYEGGS 114
                  55553.45566778***********865..66679999***********88555544444444555555556**********************9978 PP

                  EE..EEEEE- CS
           B3  89 efelvvkvfr 98 
                   f  +v +f+
  Lus10014359 115 LF--TVVIFD 122
                  77..776665 PP
2B338.91.6e-12150243189
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr..se 89 
                  ffkv ++  +l+++++++p+kf++++    +    ++ +++++    + W+v+++  k++++   + + +G   F+++n +++gD++ F+l  +   +
  Lus10014359 150 FFKVVISQIHLAKNNMRVPRKFFQRYmmmmK---GKKEEVKVQV-GEEWWKVNVCRYKSGNGiynVQMNGGFPCFARDNSIEAGDVCFFELLTTeeGD 243
                  899999999999999***********96543...4444677554.66889****777777778777888*********************76431344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1712122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-1813122IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-1317122No hitNo description
PROSITE profilePS5086311.53318124IPR003340B3 DNA binding domain
SMARTSM010194.0E-719124IPR003340B3 DNA binding domain
PfamPF023627.1E-920122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-15146254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-14146254IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-11150254No hitNo description
PfamPF023628.5E-11150247IPR003340B3 DNA binding domain
PROSITE profilePS508639.629150256IPR003340B3 DNA binding domain
SMARTSM010199.0E-5150256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKSKTTDCGD VFDSGKPHFF KVILEETITD KRLAIPETFV EKHGAALSSP VTLKLPGGTT  60
WKIDLLIEIC STSTSTTSAN ENRFWLWNET WHKFAQHYSL KHGHSLVFQY EGGSLFTVVI  120
FDVLKGPEIQ YPESIISSSS RDEFVSKYPF FKVVISQIHL AKNNMRVPRK FFQRYMMMMK  180
GKKEEVKVQV GEEWWKVNVC RYKSGNGIYN VQMNGGFPCF ARDNSIEAGD VCFFELLTTE  240
EGDDELSFKV TIAREGWKER KEVAVAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014359
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100143590.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-18B3 family protein