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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lus10014143 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 257aa MW: 29394.7 Da PI: 8.5934 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10014143 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 97.1 | 7.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
Lus10014143 9 KRIENTTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
79***********************************************96 PP
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| 2 | K-box | 65.3 | 2.1e-22 | 100 | 178 | 20 | 97 |
K-box 20 elakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
e + k+ + L + +R+l+Ge+Le +s eL+++e qLe+sl++iR++Kn+l+++qi++l++ ek l eenk+Lr k
Lus10014143 100 EQLEISKRFKPLSfECIRQLMGECLEACSTVELRKIECQLERSLSRIRARKNQLFMDQIDKLREEEKILLEENKRLRDK 178
3334457777777999*************************************************************98 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 2.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.973 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.19E-32 | 3 | 72 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.01E-40 | 3 | 71 | No hit | No description |
| PRINTS | PR00404 | 6.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.9E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 12.539 | 85 | 185 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.4E-19 | 114 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MVRGKTQMKR IENTTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS 60
SITKTIERYE KKHKDIGQAS KEFEDNTQDN DGFSMEKKIE QLEISKRFKP LSFECIRQLM 120
GECLEACSTV ELRKIECQLE RSLSRIRARK NQLFMDQIDK LREEEKILLE ENKRLRDKCG 180
VEPVLKLSNN SKKLKHHLHH QQLEIMVIAE ADGGDDDDND GGSMEVETEL FIGLGRRSTA 240
KANSTSPPAR IMTPTP*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}. |
