PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014103
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 236aa    MW: 26395.4 Da    PI: 6.8027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014103genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-191156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+ +Edell ++v+++G ++W++Iar ++ gR++k+c++rw + 
      Lus10014103 11 KGPWSHDEDELLQRLVQRHGARNWSLIARSVP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP
2Myb_DNA-binding61.22.2e-1965107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde++ +a+ ++G++ W+tIar ++ gRt++++k++w++ 
      Lus10014103  65 PFTPEEDEIITKAHSKYGNK-WATIARLLN-GRTDNSVKNHWNST 107
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.781661IPR017930Myb domain
SuperFamilySSF466891.37E-328104IPR009057Homeodomain-like
SMARTSM007175.4E-161059IPR001005SANT/Myb domain
PfamPF002491.4E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-261264IPR009057Homeodomain-like
CDDcd001676.61E-151355No hitNo description
SMARTSM007171.3E-1662110IPR001005SANT/Myb domain
PROSITE profilePS5129422.33363112IPR017930Myb domain
PfamPF002493.5E-1665107IPR001005SANT/Myb domain
CDDcd001678.10E-1365108No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2465111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDQDSAVDRV KGPWSHDEDE LLQRLVQRHG ARNWSLIARS VPGRSGKSCR LRWCNQLSPE  60
VEHRPFTPEE DEIITKAHSK YGNKWATIAR LLNGRTDNSV KNHWNSTLKR KHVVAFSDDE  120
RERQPEKKQA RTVSFSPESP SQSGSDVSDG VDVQTGNVTD DVSTELTLSL PGKRSADLLT  180
AEGKKSALET APFGSGMLAV LQEMIRKEVE SYMEGKEGEE IRNAVIERFR IGNLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-38101113104C-Myb DNA-Binding Domain
1msf_C2e-38101113104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014103
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075857.23e-88transcription factor MYB44
SwissprotO231603e-67MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067LBP58e-87A0A067LBP5_JATCU; MYB family protein
STRINGLus100141031e-174(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-63myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]