PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10014095

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 391aa MW: 44274.5 Da PI: 6.7369

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10014095	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.9	7.2e-15	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+ ++ r t+ kR++ +lKK +E SvLCd+++++iif+++ Lus10014095 11 IKKERSRMQTYKKRKANLLKKINEFSVLCDVKACLIIFGPN 51 88899999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.357	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.4E-12	1	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-18	2	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-7	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.34E-18	4	92	No hit	No description
Pfam	PF00319	4.5E-16	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGHKRVKMEL IKKERSRMQT YKKRKANLLK KINEFSVLCD VKACLIIFGP NTNNVSNQLE 60 LETWAPESCS IQDLIQQYRT SDQPRRCYSV SDYFSEKKKR VDVEIAKLRK QIHKQQFPTE 120 DGDRFNRFSA DELKLILGSI DSKLEAADQR IAALNAKRNL GIVHHQAVPI STWPQNNNPV 180 ESGFGIEREF DDDDDVAVHH QDLSRHCQFE QQNSVNALLQ LNSNHNNNYF DNYYYQNNNN 240 SLGFPAEEQN FFPEVPFCFQ PAELTGPLMA EFGSPDKGFN FGLMQAQRYP NFLMQQEMTI 300 NNQVVGRSNG MIHHGLLNSL PGTSTGATSS RPWNFDSAGN PDAGMSFIAS SSYKQQFQFS 360 PMAAGFANPR MFDESIGGGF EFGGGDHKQL *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGHKRVKMEL IKKERSRMQT YKKRKANLLK KINEFSVLCD VKACLIIFGP NTNNVSNQLE  60
LETWAPESCS IQDLIQQYRT SDQPRRCYSV SDYFSEKKKR VDVEIAKLRK QIHKQQFPTE  120
DGDRFNRFSA DELKLILGSI DSKLEAADQR IAALNAKRNL GIVHHQAVPI STWPQNNNPV  180
ESGFGIEREF DDDDDVAVHH QDLSRHCQFE QQNSVNALLQ LNSNHNNNYF DNYYYQNNNN  240
SLGFPAEEQN FFPEVPFCFQ PAELTGPLMA EFGSPDKGFN FGLMQAQRYP NFLMQQEMTI  300
NNQVVGRSNG MIHHGLLNSL PGTSTGATSS RPWNFDSAGN PDAGMSFIAS SSYKQQFQFS  360
PMAAGFANPR MFDESIGGGF EFGGGDHKQL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10014095

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10014095	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-20	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Lus10014095