PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014066
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 422aa    MW: 46064.5 Da    PI: 10.2461
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014066genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.38e-14343395557
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                  +r rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L  + +el ++ +
  Lus10014066 343 RRHRRMIKNRESAARSRARKQAYTLELEAEIAKLKEMNEELERKQDELMQMQK 395
                  699*******************************************9999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.4E-11339404IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829341392IPR004827Basic-leucine zipper domain
PfamPF001701.9E-11343395IPR004827Basic-leucine zipper domain
CDDcd147072.90E-26343397No hitNo description
SuperFamilySSF579591.13E-9343393No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-12343392No hitNo description
PROSITE patternPS000360346361IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGSHFNFNNF GNMGDGAGTR PPVVSSPLIR QSSVYSLTFD EFQNTWGGSL GKDFGSMNMD  60
ELLKNICTAE ETHAITSTTG GVAETSSGGN NLQRQGSLTL PRTLSQKTVD EVWKDFIKET  120
SSAAKDVARP PDPPQRQQTL GEMTLEEFLL KAGVVREDAN KQHMGRPNNV GFFSDLAQLN  180
NDNSGLALGF QPQQVNRDNN NNNNSFVMNQ VSNLGMNVGP SPQQLHQSRN QNQQQQPLFP  240
KPATVGFASP MHMANGAQLA SPGARSSAVG MGNTGINNNG LARRGNGLGN AGVTVATASP  300
GNRISPSDGV SRSDADISSV SPIPYVFSRG RKPNAALEKV VERRHRRMIK NRESAARSRA  360
RKQAYTLELE AEIAKLKEMN EELERKQDEL MQMQKNQFLE KMNHPWGGKR LCLRRTLTGP  420
W*
Functional Description ? help Back to Top
Source Description
UniProtFunctions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014066
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000551.11e-170PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
RefseqXP_011000560.11e-170PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
RefseqXP_011000568.11e-170PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
RefseqXP_011000576.11e-170PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
SwissprotQ9M7Q21e-114AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLB9RYH31e-164B9RYH3_RICCO; DNA binding protein, putative
STRINGLus100140660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19623481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.14e-92abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  3. Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA
    Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance.
    Plant Mol. Biol., 2018. 98(1-2): p. 137-152
    [PMID:30143991]