PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10014002

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 212aa MW: 21414.7 Da PI: 9.4504

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10014002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.1	1.6e-37	6	62	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 a+kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+ k k++ Lus10014002 6 AQKCPRCDSANTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCPKGKRA 62 689************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	2	61	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-32	6	61	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.146	7	61	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	9	45	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MPVPPAQKCP RCDSANTKFC YYNNYSLTQP RYFCKTCRRY WTQGGTLRNV PVGGGCPKGK 60 RAKLAASSSA VASTSTASPA ATSTGGGGGG SSMGDLMAGS SAGVGSGFGS FYPVHGAGGS 120 GLLTSFAGVQ SLTRNPQADF VGTSSSALSN LGLLQGLGSP FGAAPFYGQE NLMGQLGNFG 180 NFRARQVNSW QQEGGYINAT GAASVASNSE E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10014002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016710999.1	2e-41	PREDICTED: dof zinc finger protein DOF4.4-like
Refseq	XP_021596585.1	6e-41	dof zinc finger protein PBF-like
TrEMBL	A0A1U8LCV2	5e-40	A0A1U8LCV2_GOSHI; dof zinc finger protein DOF4.4-like
TrEMBL	A0A2C9U812	1e-39	A0A2C9U812_MANES; Uncharacterized protein
STRING	Lus10014002	1e-150	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Lus10014002