PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013979
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 249aa    MW: 27369 Da    PI: 5.7528
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013979genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1948103257
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                   kR+  t+ qle+Le+++  + yps+++r++L+++lgL++rq ++WF+ rR k++k
  Lus10013979  48 PKRQMKTPFQLETLEKAYSLETYPSEATRTKLSQELGLSDRQLQMWFCHRRLKDRK 103
                  69****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-1929104IPR009057Homeodomain-like
SuperFamilySSF466898.98E-1834105IPR009057Homeodomain-like
PROSITE profilePS5007116.69844104IPR001356Homeobox domain
SMARTSM003897.0E-1846108IPR001356Homeobox domain
PfamPF000467.0E-1748103IPR001356Homeobox domain
CDDcd000869.35E-1749104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDANSGADDH HHHRDRDPDD ESTPGNKNNA ADSSYSSAAA AAAANGKPKR QMKTPFQLET  60
LEKAYSLETY PSEATRTKLS QELGLSDRQL QMWFCHRRLK DRKEDKRDGN GMKKPHGKAS  120
STLMKSSSSP VDDYHQFKAG SDDHHHQVGS DDDSECGSGS SRYVEPSRNN VACFDDGHVP  180
RRYYQSSLML SAMEARAIAC VEAQLEEPLR EDGPVLGIKF DPLPPDAFGA AIGTVFLAEL  240
FSDQFVYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRLKDRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013979
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811588.16e-55PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY564e-44RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A2I4DWR41e-53A0A2I4DWR4_JUGRE; homeobox-DDT domain protein RLT1 isoform X1
STRINGLus100139790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15781611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.28e-28Homeodomain-like transcriptional regulator