PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013960
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 356aa    MW: 39189.3 Da    PI: 7.2115
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013960genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.8e-0948852457
                 S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +p ++e++++  +l    ++ +++V++WFqNr+ + k+
  Lus10013960 48 NPPRDEIRKIRVQLqefgQVGDANVFYWFQNRKSRSKH 85
                 7999*******************************995 PP
2Wus_type_Homeobox643e-2147862564
  Wus_type_Homeobox 25 rtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++P+++ei++i+ +L+e+G+++d+NVfyWFQNrk+R+++k
        Lus10013960 47 VNPPRDEIRKIRVQLQEFGQVGDANVFYWFQNRKSRSKHK 86
                       79************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-54889IPR009057Homeodomain-like
PfamPF000463.4E-64885IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MASSNRHWPS LFKSKPAPCN PHHHHSWQHD VTPPPPTHRS NSSYNPVNPP RDEIRKIRVQ  60
LQEFGQVGDA NVFYWFQNRK SRSKHKLRHL QPSKTTSHQP PNPPTTTTDL SSSSSSSSDN  120
YKPSPRSAGS KRTLSSRSEQ NGVVLLDPST NTPTHQPSSY DFFSSEPAPF FMSGQQPAGF  180
SLSEPVPGNV VGPCTSLLLS DILNLNHHRK LMDQVEDDGS KKLMLDHQLC YPHETSNNDN  240
AVTTTSPIVG VACNPVTAPF LSHIPAGMGS STGDHHHHHE SEQTNSSKMT VFINDVAFEV  300
GTGPFNVRES FGDDILLVHS SGQPVLTDDW GITLQSLHHG GFYYLVPFPT TAHHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978210.15e-80PREDICTED: WUSCHEL-related homeobox 9
TrEMBLW8Q0342e-80W8Q034_POPTO; WOX9b
STRINGLus100139600.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-50homeobox-3