PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013958
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 255aa    MW: 28655.1 Da    PI: 7.5613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013958genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.6e-21112163255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd  ++ng  +r++lg+f+taeeAa a+++a+++++g
  Lus10013958 112 HYRGVRRRP-WGKYAAEIRDsTRNNG--ARVWLGTFDTAEEAALAYDRAALRIRG 163
                  8********.**********444454..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.69E-30111172No hitNo description
Gene3DG3DSA:3.30.730.106.0E-29111172IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-20112173IPR016177DNA-binding domain
SMARTSM003803.9E-36112178IPR001471AP2/ERF domain
PROSITE profilePS5103223.393112172IPR001471AP2/ERF domain
PfamPF008475.1E-15112163IPR001471AP2/ERF domain
PRINTSPR003672.2E-11113124IPR001471AP2/ERF domain
PRINTSPR003672.2E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQNNVLTLED VWASFINGNQ SRNDEEHEDL PSPKVQNGEG QQPMQSILER LPSLGRWISM  60
GEEAWDEILK ADFLRPSMES TELPSVSDVF SSHEFCDGRV TVEKNKVVRT KHYRGVRRRP  120
WGKYAAEIRD STRNNGARVW LGTFDTAEEA ALAYDRAALR IRGLKKAHLN FPFEPVANSG  180
FGGGGDLGGR KRKRGSRKCE GQDGRVTDKQ SILKRCRGEN REGRLIGDGV FELEDLKELM  240
GSDFLDSFLK SLSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-25108180169ATERF1
3gcc_A3e-25108180169ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188194GRKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013958
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031507.11e-59ethylene-responsive transcription factor 1B
TrEMBLA0A0D2PZI13e-55A0A0D2PZI1_GOSRA; Uncharacterized protein
STRINGLus100139580.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.18e-22ERF family protein