PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013917
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 276aa    MW: 29901.9 Da    PI: 7.0211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013917genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-1186132354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L +++  +k+L
  Lus10013917  86 KSHSEAERRRRERINAHLATLRGLIPGT-----EKMDKATLLAEVISQVKML 132
                  58*************************8.....8*********999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.56783132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-986132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-1387136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-1387135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1189138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.57E-7172239No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-4172215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MFADDEYFYN SSPFGYSGKF SAVDHDLPPF PEAFDGGFSR GGSLSSSASQ ALVLDSERGE  60
LVKAPAMRVA AGKKEVSEAK ALAALKSHSE AERRRRERIN AHLATLRGLI PGTEKMDKAT  120
LLAEVISQVK MLKQNAMESS KGLLIPMDHD EVKVVVEPSR NQGSTTLSFK ASLCCEYRPE  180
LMSEIRQAIE SLQLKLVDAE MSTLGSRVKS VFILTKCGGG AEDNVEAQSN LASCIHEALS  240
SVVEKGYASA EYSPRTMIPN KKRRVSYFDS SSSSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013917
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596198.11e-105transcription factor bHLH30-like isoform X2
TrEMBLA0A2C9U9M11e-104A0A2C9U9M1_MANES; Uncharacterized protein
STRINGLus100139170.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.13e-34basic helix-loop-helix 32