PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013814

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TCP

Protein Properties

Length: 216aa MW: 23134.2 Da PI: 10.1581

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013814	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.2	4.5e-32	56	130	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........s 66 +++++s++h+kv gR+RRvRl+a+caar+F+L++eLG+ +d++t+eWLl+ a+++++++tgt + Lus10013814 56 RRRSSSSDRHSKVYGRGRRVRLPALCAARIFQLTRELGHRSDGETVEWLLRHAEKSVIAATGTgiiptvpisstT 130 58999**********************************************************555555444430 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-26	60	127	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.717	61	115	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MASSSTTFAV SDHLHQPQNH HHQSLHSLAL VPTTAAAESQ LATTTTTSSA VIPRPRRRSS 60 SSDRHSKVYG RGRRVRLPAL CAARIFQLTR ELGHRSDGET VEWLLRHAEK SVIAATGTGI 120 IPTVPISSTT GPPPIAVSPS SIPCRTRTIL TGHHGMFTPT PPPPSFHLDL EYRNMPFTAL 180 LLQPMAAAAA AAAASGGEGR QEEEKVFEDM KKQEA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013814

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021660612.1	2e-59	transcription factor TCP11-like
TrEMBL	A0A2C9VCC9	8e-57	A0A2C9VCC9_MANES; Uncharacterized protein
STRING	Lus10013814	1e-154	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Lus10013814