PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013614
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 309aa    MW: 34675.5 Da    PI: 6.782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013614genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-183888155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s++ GVr+++ +grWvAeI+d      k+ r +lg+f tae+Aa+a+++a+  l+g
  Lus10013614 38 SKFVGVRQRP-SGRWVAEIKDtT----KKIRMWLGTFETAEKAARAYDEAACLLRG 88
                 79********.7*********33....36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-193896IPR016177DNA-binding domain
CDDcd000184.89E-323895No hitNo description
PfamPF008476.4E-133888IPR001471AP2/ERF domain
SMARTSM003803.1E-3539102IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-283996IPR001471AP2/ERF domain
PRINTSPR003672.6E-74051IPR001471AP2/ERF domain
PRINTSPR003672.6E-76278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEIHFQQNGD ATTVPVVMSK PSKGKGRSRV ANSINNNSKF VGVRQRPSGR WVAEIKDTTK  60
KIRMWLGTFE TAEKAARAYD EAACLLRGSN TRTNFITHVS FDSPLASRIR NLLEKKKSNK  120
KKLQADAIVQ VPIKPEGPVH TASPPTYFSS SCSTSSSSSS ISDDNSSSSE TVLIHDSRLF  180
DDVYKPDLST CCQDLQIELP SPPIEHQSCD TWSFGFDHIN GFGHKFQYTP SHDTFEFPRN  240
YNSICSSTSA DDEQQQQQQQ QREFSEFDRM KVERQISASL YAISGVHEYM ETVRDPNDGL  300
WDLPPLFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1337951271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}.
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013614
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
UniProtINDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899372.11e-93ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY882e-86ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
SwissprotA2Q5W12e-86ERN1_MEDTR; Ethylene-responsive transcription factor ERN1
TrEMBLA0A067L5C65e-87A0A067L5C6_JATCU; Uncharacterized protein
STRINGLus100136140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-30related to AP2 11
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Cerri MR, et al.
    The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection.
    Plant Physiol., 2016. 171(2): p. 1037-54
    [PMID:27208242]
  4. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  5. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  6. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]