PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013502
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 541aa    MW: 58298.5 Da    PI: 9.0298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013502genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12282329254
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r +h++ E+rRR++iN++ + Lre++P+     ++K +Ka+ L +++eYI+ L
  Lus10013502 282 RSKHSATEQRRRSKINDR-QMLREIIPHG----DQKRDKASFLLEVIEYIQFL 329
                  889***************.9********7....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-18277338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-13279338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.242280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10282329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-12282334No hitNo description
SMARTSM003532.4E-8286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MICSGVLKSE INSWSAGRKR KPTLDFLSLC SHSSAAAAAA QQQDPSRPSS SQGVYLKTHD  60
FLQPLERGSG RPAAKEDTEA SEVSTTTTTP KSLPPQAPQT KVEHILPGGI GTYSISHISY  120
YNNNQQRVPK PEGSSVFAAG QTSSGEKNEE NSNCSSYTGG GSGFTLWEES GLKKGKTGKE  180
NFADRSDVVR EPPVKTGGQW TTSERPSQSS TNHHSNHFSS LSPPDQPSGL KRRSFMEMMK  240
SAKGDEDLDD DEDLIPKKES PPAELIVKVD GKSSDQKANT PRSKHSATEQ RRRSKINDRQ  300
MLREIIPHGD QKRDKASFLL EVIEYIQFLH EKVHKYEGSS YQGWNLDPEI KLSPWKSNNR  360
TDESHVDAKK VSICTAAIPG GGVLQNPADS DTSSATTPKA AAIAFPMFNP ARAGCSSASP  420
QVTSDVINGG AIRQASNSKS GTRNGFDGGD KLKEHGLNVD GGTISISSAY SRGLVSRVTE  480
ALRSLGVDLS EAKISVEVEV GKGSKSKSAP PSITNKGERE IEFSSNQRES NQFFKKLKTG  540
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013502
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080441.11e-167transcription factor BIM1 isoform X1
TrEMBLA0A067KHS21e-166A0A067KHS2_JATCU; Uncharacterized protein
STRINGLus100135020.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.49e-96bHLH family protein