PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013447
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 302aa    MW: 31678.1 Da    PI: 6.8002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013447genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93e-101154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT e d+ + +a + ++ +   +W++Ia  +  g+tl+++k+++
      Lus10013447 11 SWTREQDKAFENALATYPEDdsdRWEKIATDVE-GKTLEEVKDHF 54
                     7********************************.**********8 PP
2Myb_DNA-binding43.86e-14123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      Lus10013447 123 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.571762IPR017884SANT domain
SMARTSM007173.6E-9860IPR001005SANT/Myb domain
PfamPF002491.4E-71154IPR001005SANT/Myb domain
CDDcd001671.21E-81158No hitNo description
Gene3DG3DSA:1.10.10.601.3E-41154IPR009057Homeodomain-like
SuperFamilySSF466898.28E-111165IPR009057Homeodomain-like
PROSITE profilePS5129417.61115172IPR017930Myb domain
SuperFamilySSF466898.97E-17118173IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17120170IPR006447Myb domain, plants
SMARTSM007174.5E-11120170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-11123166IPR009057Homeodomain-like
CDDcd001671.36E-10123168No hitNo description
PfamPF002497.5E-12123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAVDEVGSSC SWTREQDKAF ENALATYPED DSDRWEKIAT DVEGKTLEEV KDHFDLLLED  60
IGLIESGCVP LPSYNSSSES STSHGGDEGT GKKGGHGGGN NNSESNQGNK GSRADQERRK  120
GIAWTEDEHR LFLLGLEKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR  180
SSIHDITSLN NGEIAAAQGP ITGQTNGASA GVGGSGKAGK QPSQHPGGPP GVVGIYGAPT  240
IGQPIGGPLV SAVGTPVNLA SPSHMAFGVR ARVPGAMVPG APMTMGGPMA YPMPPTTSAH  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-19777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013447
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360003.21e-168transcription factor DIVARICATA-like isoform X1
RefseqXP_008360005.21e-168transcription factor DIVARICATA-like isoform X1
RefseqXP_017184585.21e-168transcription factor DIVARICATA-like isoform X1
RefseqXP_017184586.21e-168transcription factor DIVARICATA-like isoform X1
RefseqXP_028946697.11e-168transcription factor DIVARICATA-like isoform X1
SwissprotQ9FNN61e-120SRM1_ARATH; Transcription factor SRM1
TrEMBLD9ZJ781e-166D9ZJ78_MALDO; MYBR domain class transcription factor
STRINGLus100134470.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-102MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]