PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 84aa    MW: 9015.03 Da    PI: 9.6929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013350genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.94e-113976239
     trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmr 39
                 Wt+q++ +Li+a++e++  l+rg+lk+++Weev++++ 
  Lus10013350 39 WTHQQTVHLIQAYQEKWYGLNRGQLKATHWEEVAAAVV 76
                 **********************************9984 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-73878No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MSTPSPSSSS PPPNQPQSSS TPYSPAPPIS GKKPQPVPWT HQQTVHLIQA YQEKWYGLNR  60
GQLKATHWEE VAAAVVSRCG HNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021678170.18e-24trihelix transcription factor ASIL1-like
RefseqXP_021678171.18e-24trihelix transcription factor ASIL1-like
RefseqXP_021678172.18e-24trihelix transcription factor ASIL1-like
RefseqXP_021678173.18e-24trihelix transcription factor ASIL1-like
RefseqXP_021678174.18e-24trihelix transcription factor ASIL1-like
TrEMBLA0A2C9UP254e-22A0A2C9UP25_MANES; Uncharacterized protein
STRINGLus100133503e-53(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-15Trihelix family protein