PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013179
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 407aa    MW: 44979.3 Da    PI: 6.063
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013179genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93e-1475162186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Li+a  e+  +l+rg lk+++W+ev++++ +++ +    ++ +qCk++++ ++k+yk +k+    +  +  s +p+++++e
  Lus10013179  75 CWSEAATAVLIDAWAERYVELSRGILKQHHWKEVADVVsSREDYikpPKTDIQCKNRIDTVKKKYKSEKAKIDAG--GGPSLWPFYHRIE 162
                  7*************************************83344423367889*******************9997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2373164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDDDAGDDEI QSPRSPSPYN GRISVPPHNG DLPPTVAAAA PPVSPPQREP SPSAAYHVLA  60
LAAVPKTANN GREDCWSEAA TAVLIDAWAE RYVELSRGIL KQHHWKEVAD VVSSREDYIK  120
PPKTDIQCKN RIDTVKKKYK SEKAKIDAGG GPSLWPFYHR IEQLIGLNPT PTATKPSRKP  180
ATKTPVSGSA RVPTGIPVGK RSSSQRRQQP YQFGNLQSNR MNNGRQKVRK RGAAAMLMDS  240
SSEEEEEEEE EEEEEEEEEE TVSFRNYDYS FPAASKKRKM EQNGEVKKEE GGGGWGDSIR  300
MLTVSIVKLG EAYEQTEKKK LEQVVEMEKT RMKFMQELEL QRMQFFMKTQ MEISQIKSRR  360
IRRQSPSPPA AAAGGGGIGI VAAAAIAAAS SNHGDSDDEL KEELSE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021637714.13e-99trihelix transcription factor ASIL2-like
SwissprotQ9LJG84e-80ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2C9UYM34e-96A0A2C9UYM3_MANES; Uncharacterized protein
STRINGLus100131790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-54sequence-specific DNA binding transcription factors