![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10012881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 371aa MW: 40688.2 Da PI: 6.513 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.8 | 1.3e-09 | 154 | 201 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r + NR +A rs +RK +i eLe+kv++L+ae +L +l Lus10012881 154 KRAKRIIANRQSAARSKERKARYILELERKVQNLQAEAATLGAQLTLF 201 9*************************************9998877665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-15 | 150 | 214 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.151 | 152 | 215 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-9 | 154 | 209 | No hit | No description |
Pfam | PF00170 | 1.1E-7 | 154 | 198 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.3E-9 | 154 | 206 | No hit | No description |
CDD | cd14703 | 1.32E-23 | 155 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MQDDTNPNPN TTASPNANGG DSQTPRGSFH RRAFSEFEFR IPDDLDLDPL DAPSVTSFDE 60 LGSEDDLFYT YMDMEGGSLG SKPDDIDQKI AGKVGIDDAA ANPSLSGGVG GNTGAKGKHR 120 HSNSVDGSSF VQSVEAKKAM GPDKLAELWN MDPKRAKRII ANRQSAARSK ERKARYILEL 180 ERKVQNLQAE AATLGAQLTL FQRDTLGLTN ENANLKLRVQ AMEQQAQLRE AVNDALKKEV 240 EMLKIAMGER TAQQQLEYPY NMGMHHQHHH LSYNHPPFFP LHQQQPGNIM YNPHSIQVPQ 300 FHPFQPNNNL PNSCHLPTVA AALPNHHGRG FPEMLPHERL QGLDISGGGG RSYVVVKSEG 360 PSISASESSN * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10012881 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021801589.1 | 1e-116 | transcription factor RF2b | ||||
Swissprot | O22873 | 9e-95 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A1R3GZX7 | 1e-116 | A0A1R3GZX7_COCAP; Uncharacterized protein | ||||
STRING | Lus10012881 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40620.1 | 2e-84 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10012881 |
Publications ? help Back to Top | |||
---|---|---|---|
|