PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012842
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 103aa    MW: 11336.7 Da    PI: 9.4545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012842genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.3e-0726691454
                 HHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS
          HLH 14 driNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54
                 d+i + +++L++l+P+a    + +  K s + +L+++++YI++L
  Lus10012842 26 DQIIDLISKLQRLVPEANstsHCSRNKGSASKVLQETCNYIREL 69
                 578899**********6547766666788899**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.1081269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-82687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-72787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MSSIRRSSSS RSRHTTTRRS SAISDDQIID LISKLQRLVP EANSTSHCSR NKGSASKVLQ  60
ETCNYIRELN RQVDDLSGRL SELLASIDSD SDQAAIIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012842
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602440.13e-31PREDICTED: transcription factor PRE5-like
RefseqXP_016432768.13e-31PREDICTED: transcription factor PRE5-like
SwissprotQ9LJX13e-29PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A218XWZ25e-30A0A218XWZ2_PUNGR; Uncharacterized protein
TrEMBLM5XQD95e-30M5XQD9_PRUPE; Uncharacterized protein
STRINGLus100128422e-64(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.11e-28bHLH family protein