PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012737
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 284aa    MW: 31581.3 Da    PI: 10.5693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012737genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-0991166252
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC............................TTS-STCHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkas.........................kapskKlsKaeiLekAveYIk 52 
                  +++h+  Er RR+r+ s ++ Lr +lP+++                         +  sk  +Ka++L ++++ ++
  Lus10012737  91 KEKHKYSERDRRSRVSSLYSSLRMILPTLVkvslphptcftetvqcqgltltsmaRYESKPKNKASVLHETIRQVR 166
                  689*************************999***********************6666666**********98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.3489168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-791169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-791166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.76E-691119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.76E-6147174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.66E-5212260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MENRKWMNKG SLVYNDQGSF LKGIIALTGG TLSIMRHQMT EAARMLEIRE AQRISSFYKS  60
RAHPNSIDYR QVASYLRRTT SNRDEAKQIS KEKHKYSERD RRSRVSSLYS SLRMILPTLV  120
KVSLPHPTCF TETVQCQGLT LTSMARYESK PKNKASVLHE TIRQVRRMNS AASALNAICG  180
GGSDCLYPGG DDHVKVENNV DKGKGIDRLV KVTVSCNERS DLLVDIGKAV RSVKAKVVRA  240
EMVTVGGRTK CVFWVKGVDG FEGRRMLSMA VDAAARGHNH TVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100127370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-09bHLH family protein