PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012703
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 404aa    MW: 44981.7 Da    PI: 4.5692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012703genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-193988255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d +    ++ r++lg+f+taeeAa+a+++a+  l+g
  Lus10012703 39 RFVGVRQRP-SGRWVAEIKDtV----QKIRVWLGTFDTAEEAARAYDEAACLLRG 88
                 789******.7*********55....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.28E-323895No hitNo description
Gene3DG3DSA:3.30.730.101.4E-273995IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-193997IPR016177DNA-binding domain
PfamPF008472.0E-133988IPR001471AP2/ERF domain
SMARTSM003801.2E-3739102IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853996IPR001471AP2/ERF domain
PRINTSPR003675.8E-84051IPR001471AP2/ERF domain
PRINTSPR003675.8E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGRKRKVVAE AATDQTSSGS ENDLQVNDID RRMSTRKKRF VGVRQRPSGR WVAEIKDTVQ  60
KIRVWLGTFD TAEEAARAYD EAACLLRGSN TRTNFWPSSN PSSSGHQYGS HPAARTSSFC  120
SPPPALPTKI TNLLLQRLCR SRTAGNDSQQ LQLPEEMQLP RQGLEEGEQT TMAAPAPQAT  180
ATTNFTDFFT ESLLLPSSID QKEEDYNCFG ISDQQAGSAE FNLATTCDFN SQLFSDSQEI  240
GGVDDNGGLI NFDFVDDLRI TTLNSSAEYY SPFQMADHQE IDQEEYYSSE IKRMKYERKF  300
SASLYAFHGI PECLKLKVDQ AAGDQLTKLQ SACRRRNQRG MLMEEEEDRE RFATTSTTTT  360
TKTEESASMA VDQMVSSSSA ANESEESSML WSSLDLPSIC FVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-133195671Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012703
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100127030.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-23related to AP2 11