PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012670
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 223aa    MW: 24815.3 Da    PI: 10.3155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012670genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08140180954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Lus10012670 140 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 180
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14132192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14135190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-13137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6141180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-5154184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDLDLMMKQQ STSSSSTTSN GGGDPPHHNH LDMMSMLLHS DFSNEVVHQF HTDHHPHHLH  60
IHNIPPSAFI GTPISNYNNI TSPPFGSASS LVEKKNSTAA IREMIFRIAA MQPIHIDPES  120
VKPPKRRNVR ISKDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL  180
KKQVNTLQQS ANSNVGFMKI NNNCVPSSNG NQVMLGSSMQ ML*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012670
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043535.11e-65PREDICTED: transcription factor HEC2-like
SwissprotQ9SND44e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLB9HHC02e-60B9HHC0_POPTR; Uncharacterized protein
STRINGLus100126701e-163(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]