PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012554
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 785aa    MW: 85933.9 Da    PI: 6.1244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012554genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.22.2e-1364197831374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+lLl+cAeav+++d  la+++L +l+  +sp gd+mqR+aa+fteAL+arla    ++ + +a +p +  ++ns e l++++++++++P++kf+h+
  Lus10012554 419 LVHLLLACAEAVAKEDYMLARKYLHHLNRVVSPLGDSMQRVAACFTEALSARLAAtlATKPTTSAPRPFTPFPSNSMEILKIYQILYQACPYIKFAHF 516
                  68****************************************************965566677777777777899*********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e ++etg+ L+++A++l+vpfe+++ va++ledl+++++
  Lus10012554 517 TANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SPECVRETGRCLTELAHSLHVPFEYHA-VAEELEDLKPHMF 609
                  *****************************************************....9**************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn+v +lhr++   + +   +  +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  Lus10012554 610 NRRVGEALAVNSVNRLHRVP---GRS---IGLLLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 701
                  *******************9...333...457****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vaceg er+erhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Lus10012554 702 EIRNIVACEGVERTERHERLEKWRKVMEGKGFKGVALSGNAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRAILAASAWR 783
                  *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.792393763IPR005202Transcription factor GRAS
PfamPF035147.8E-134419783IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MINSVCGSVG SLKSTESSSC SKMHHQPTSP NGSSVSESMK TTMSSSDMDQ QQQQQTILTP  60
PSLNFPPAVK FEVDGDVEIQ SPDSSIWDSF FSDHVAEGDF MISSPVRNTT NLFPSPSSFS  120
YSTYVQAMQG QNSSITGCSP PRHLSSQLGS FSSSTSLKGK GQSPLHRMFN SPNNNSHFMQ  180
LESLTGIDDF LDDYKDHGGG NTSTSTSKIM SSSSSNNGGP TTAQLFDLPI PVSSMMDCLT  240
MPNPPSRFCE STSNSCGTTK THQLVEEREM FPMGPLASLS DRLQEERDQE KQVQKLQLHH  300
AAPSAETTTT AQQPLEHAQQ AGLSGHGGLM VPLPVESEQL KRLRNRAGIT SLCSILTRYL  360
LGEFEQLQLH HAAPPAETTT TAQQPLEHAQ QAGLAGHGGL MIPLPVESEQ EQSDSGLQLV  420
HLLLACAEAV AKEDYMLARK YLHHLNRVVS PLGDSMQRVA ACFTEALSAR LAATLATKPT  480
TSAPRPFTPF PSNSMEILKI YQILYQACPY IKFAHFTANQ AIFEAFEAEE RVHVIDLDIL  540
QGYQWPAFMQ ALAARPGGAP FLRITGVGSS PECVRETGRC LTELAHSLHV PFEYHAVAEE  600
LEDLKPHMFN RRVGEALAVN SVNRLHRVPG RSIGLLLGMI RDQAPNIVTL VEQEASHNGP  660
YFLGRFLEAL HYYSAIFDSL DATFPPDSAQ RAKVEQYIFA PEIRNIVACE GVERTERHER  720
LEKWRKVMEG KGFKGVALSG NAVTQSKILL GLYSCDGYRL TEDNGCLLLG WQDRAILAAS  780
AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-994107829377Protein SCARECROW
5b3h_D1e-994107829377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012554
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022886724.10.0scarecrow-like transcription factor PAT1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB9RH370.0B9RH37_RICCO; DELLA protein GAI1, putative
STRINGLus100125540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-97RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]