PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012484
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 353aa    MW: 38962.2 Da    PI: 5.8637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012484genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10233281355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Lus10012484 233 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 281
                  58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-17228295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-11228285No hitNo description
PROSITE profilePS5088815.485230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16231296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7233281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGGGGGDLSY QHDMESQNRA MNCSPSEMAA NPFFASAWDP VVSLGQHESF GGSSMVCQNE  60
FAHHQSFPMA LDSQAGRDNS HLVHYPFDSG FVELVGNGNF SEMVGPFGLN ECGQIPNPGF  120
HPNFGSQTDQ EDHPMSEGGV GASPDVNRRK RVAGSTSPFD SNKKNAKEEL DKDQSRDNCD  180
ALKEGYDKKP RPRRMAGSNS QAAKQAKEDS NNSGETAKDN YIHIRARRGQ ATNSHSLAER  240
VRREKISERM RLLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPDVSI  300
DIERILSKDV SEPSPTHAVH TIYFLPEDCW SNEIFFHLIL CSSCFTHTVI TY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533688.11e-123transcription factor bHLH74 isoform X3
TrEMBLA0A2C9U0J21e-120A0A2C9U0J2_MANES; Uncharacterized protein
STRINGLus100124840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-63bHLH family protein