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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lus10012457 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family |
bHLH |
Protein Properties |
Length: 253aa MW: 28902.2 Da PI: 9.4444 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lus10012457 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.2 | 6.1e-13 | 85 | 132 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq
Lus10012457 85 QDHVIAERKRREKLSQKFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 132
6799************************.....9******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MEDHSHFINQ WRQMESSNNS SFGVPTLENG LFNTTMPSHH HALEMGFLKP KQETAENMYL 60 SQQNWFGNHH NIISKGRIRM SQQSQDHVIA ERKRREKLSQ KFIALSAIVP GLKKMDKASV 120 LGDAIKYLKQ LQERVKTLEE QTRNKSMESA KVVVKKSQVF DECGSSEQLP EIEARFSDRH 180 VLIRVHCEKK KGLLEKTVAE IEKLHLTVIN TSVLTFGSSA LDLTIITQMD VEFNMTVKEV 240 VQKLHPAFSL FN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 86 | 135 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 90 | 95 | ERKRRE |
2 | 91 | 96 | RKRREK |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |