PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012389
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family BBR-BPC
Protein Properties Length: 334aa    MW: 37408.3 Da    PI: 9.6959
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012389genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind390.91.8e-11913331301
    GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla. 92 
                  mdd g+re  r+k+ +++ a  + ++    +q+ms++aerda+i+ern+a+sekkaa+ erdmaflqrd+a+aern+al+erdn++++l+++ensl+ 
  Lus10012389   1 MDDGGHREngRHKPdQFKAAqsQWMQPPSMKQIMSIMAERDAAIHERNMAISEKKAAISERDMAFLQRDSAIAERNNALMERDNAIATLQYRENSLSn 98 
                  9*****999******9*96655778888999****************************************************************999 PP

    GAGA_bind  93 ...salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkksekskkkvkkes 182
                     s++p+g+q+++g k+i++ qq+++  p++++ ++  re++ +++lp++ +++++++ k+ k + +a+ p +k +k   k+kk++e+ +       
  Lus10012389  99 gnmSSCPTGCQISRGMKHIHHPQQHTHhlPHMDEATYSSREMQGNDSLPTSPEPTKSRRGKRAK-EPKATPPNKKCSKsprKAKKENEDLN------- 188
                  9999********************766699****************999877655555444443.33333333333331113333333333....... PP

    GAGA_bind 183 ader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251
                     +                             ska++k +d++ln++++De+t+P+PvCsCtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r
  Lus10012389 189 ---KvmftkaiewkaeqdmddgggedlnkqlitSKADWKGQDIGLNQIAFDETTMPAPVCSCTGIFRQCYKWGNGGWQSSCCTTTLSMYPLPTVPNKR 283
                  ...122333345667999******************************************************************************** PP

    GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  +aRi+grKmS++af+klL++LaaeG dls+pvDLk+hWAkHGtn+++ti+
  Lus10012389 284 HARIGGRKMSGSAFSKLLSRLAAEGNDLSHPVDLKHHWAKHGTNRYITIK 333
                  *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1691333IPR010409GAGA-binding transcriptional activator
PfamPF062178.6E-1021333IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDDGGHRENG RHKPDQFKAA QSQWMQPPSM KQIMSIMAER DAAIHERNMA ISEKKAAISE  60
RDMAFLQRDS AIAERNNALM ERDNAIATLQ YRENSLSNGN MSSCPTGCQI SRGMKHIHHP  120
QQHTHHLPHM DEATYSSREM QGNDSLPTSP EPTKSRRGKR AKEPKATPPN KKCSKSPRKA  180
KKENEDLNKV MFTKAIEWKA EQDMDDGGGE DLNKQLITSK ADWKGQDIGL NQIAFDETTM  240
PAPVCSCTGI FRQCYKWGNG GWQSSCCTTT LSMYPLPTVP NKRHARIGGR KMSGSAFSKL  300
LSRLAAEGND LSHPVDLKHH WAKHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012389
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613374.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613375.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613376.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613377.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613378.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613379.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-151BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2C9VYP50.0A0A2C9VYP5_MANES; Uncharacterized protein
STRINGLus100123890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-147basic pentacysteine 6