PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WOX | ||||||||
Protein Properties | Length: 384aa MW: 43015.4 Da PI: 8.8257 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.6e-20 | 241 | 301 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R++++++ql++Le+ F + n++p +e+++e++++l +++e+ V++WFqNrRa+ k+ Lus10012250 241 RQRWAPKQSQLQILERIFSEcNSNPGKERIKEITAELlkygHVSESSVYNWFQNRRARCKR 301 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 85.1 | 8e-28 | 240 | 303 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+++Q++iLe+++++ +P ke+i++itaeL +yG++++ V++WFQNr+aR ++kq Lus10012250 240 TRQRWAPKQSQLQILERIFSECNSNPGKERIKEITAELLKYGHVSESSVYNWFQNRRARCKRKQ 303 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47095 | 1.7E-25 | 30 | 109 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.5E-25 | 36 | 109 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 5.1E-26 | 37 | 108 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.01E-22 | 38 | 104 | No hit | No description |
PROSITE profile | PS50118 | 21.327 | 38 | 107 | IPR009071 | High mobility group box domain |
Pfam | PF00505 | 2.9E-23 | 38 | 107 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50071 | 14.414 | 237 | 302 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-12 | 239 | 306 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-15 | 240 | 305 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.4E-16 | 240 | 304 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.23E-12 | 241 | 303 | No hit | No description |
Pfam | PF00046 | 6.6E-18 | 241 | 301 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MKGGKSKSEA KNTKLSVTKK PAKPTKQAAK AAKDPNKPKR PPSAFFVFME DFREQFKKDH 60 PKNKSVAAVG KAAGEKWKSL TDAEKQPYMA KAEKRKAEYE KKMKAYNKGE AEAATKDEEE 120 SEKSMSEVND DEDDEEGSAE MREQQQQQPD RRPQLGNGGG GEEEGTIYNN GAALIRNGLG 180 VKVMTDEQME MLRKQISVYS TICDRLVQMH TSLALNRHEF PGMLQYGDPL SACGSSKIPT 240 RQRWAPKQSQ LQILERIFSE CNSNPGKERI KEITAELLKY GHVSESSVYN WFQNRRARCK 300 RKQSAPAPRT GNFDVEAAAR VVDHAAAAKQ KIPEDDDNHK SPLIVDQLYF HTPEIGIDQL 360 IGKLEVCEGF NLYYPEQQNG PSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2yqi_A | 7e-15 | 36 | 106 | 8 | 77 | High mobility group protein B3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 294 | 302 | RRARCKRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012250 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041212.1 | 2e-64 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
TrEMBL | B9H5J3 | 1e-62 | B9H5J3_POPTR; Uncharacterized protein | ||||
STRING | Lus10012250 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 5e-42 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Phytozome | Lus10012250 |