PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012250
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 384aa    MW: 43015.4 Da    PI: 8.8257
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012250genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-20241301257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R++++++ql++Le+ F + n++p +e+++e++++l    +++e+ V++WFqNrRa+ k+
  Lus10012250 241 RQRWAPKQSQLQILERIFSEcNSNPGKERIKEITAELlkygHVSESSVYNWFQNRRARCKR 301
                  89*****************99**************************************97 PP
2Wus_type_Homeobox85.18e-28240303265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RW+P+++Q++iLe+++++   +P ke+i++itaeL +yG++++  V++WFQNr+aR ++kq
        Lus10012250 240 TRQRWAPKQSQLQILERIFSECNSNPGKERIKEITAELLKYGHVSESSVYNWFQNRRARCKRKQ 303
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF470951.7E-2530109IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.5E-2536109IPR009071High mobility group box domain
SMARTSM003985.1E-2637108IPR009071High mobility group box domain
CDDcd013901.01E-2238104No hitNo description
PROSITE profilePS5011821.32738107IPR009071High mobility group box domain
PfamPF005052.9E-2338107IPR009071High mobility group box domain
PROSITE profilePS5007114.414237302IPR001356Homeobox domain
SMARTSM003891.0E-12239306IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-15240305IPR009057Homeodomain-like
SuperFamilySSF466892.4E-16240304IPR009057Homeodomain-like
CDDcd000861.23E-12241303No hitNo description
PfamPF000466.6E-18241301IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MKGGKSKSEA KNTKLSVTKK PAKPTKQAAK AAKDPNKPKR PPSAFFVFME DFREQFKKDH  60
PKNKSVAAVG KAAGEKWKSL TDAEKQPYMA KAEKRKAEYE KKMKAYNKGE AEAATKDEEE  120
SEKSMSEVND DEDDEEGSAE MREQQQQQPD RRPQLGNGGG GEEEGTIYNN GAALIRNGLG  180
VKVMTDEQME MLRKQISVYS TICDRLVQMH TSLALNRHEF PGMLQYGDPL SACGSSKIPT  240
RQRWAPKQSQ LQILERIFSE CNSNPGKERI KEITAELLKY GHVSESSVYN WFQNRRARCK  300
RKQSAPAPRT GNFDVEAAAR VVDHAAAAKQ KIPEDDDNHK SPLIVDQLYF HTPEIGIDQL  360
IGKLEVCEGF NLYYPEQQNG PSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2yqi_A7e-1536106877High mobility group protein B3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294302RRARCKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041212.12e-64PREDICTED: WUSCHEL-related homeobox 8-like
TrEMBLB9H5J31e-62B9H5J3_POPTR; Uncharacterized protein
STRINGLus100122500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.15e-42WUSCHEL related homeobox 14