PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012237
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 353aa    MW: 39781 Da    PI: 5.5197
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012237genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS98.78.4e-31633317329
         GRAS  17 lelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege..erv 112
                   ela+ +  r+se +sp+g+ ++Rl  y  + + ++              +++s    +    al++f+ ++P+  ++h++aN+aIle +++   + +
  Lus10012237   6 PELAEMITGRISEKVSPTGEINNRLLYYAFQPIDKQSEY----------LKQES---GKIFDRALEAFYRIFPYGMVAHFAANSAILETTSSLnpDVL 90 
                  566777777777777777777777777776666555443..........22222...3344457788***********************98777899 PP

         GRAS 113 HiiDfdisqGlQWpaLlqaLasRpeg.....................ppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakr 185
                  Hi+Dfdi++G+QWp+L+ aLa++++                      + ++++T+++  +++    + ++ e+t+++L+++A+++gv+++++ +   +
  Lus10012237  91 HIVDFDIGEGVQWPPLILALAQQQRRipqinqniqnpnfyydtilptTTMIKLTAINWRSEEslnsNCRRFESTKKQLQDYASSFGVTMRIEEM---E 185
                  *********************7774445677789999*******98788*******99777788888999**********************97...7 PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.....vvvvveqe....adh.nsesFlerflealeyysalfdslea 273
                  +++l  ++L+   + +l  n++  l ++ +++ + +   +e+L l ++l ++     ++++++ +    +d+ n+  F   f + + +y a+++s+e 
  Lus10012237 186 IQEL-KRSLKKGGKRCLTFNCMWGLPHMGRRRSKAQ--VSEFLGLARELLSQpgangLLTFSDGNgnnsSDRnNDCGFGGFFESYMAHYRAVLESMEW 280
                  7777.46788888***************95555554..59*********6644444599**9988333344434448988888999************ PP

         GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                  ++p+   e+r  +E  ++++ i +     g+     +e +e+ +e +++ GF+pv++
  Lus10012237 281 SFPARLpEARLAMEYLFVAPLIHSSEW-GGK---WGEEMAEEGSELVSRLGFQPVTI 333
                  ***998788888998877776665433.233...34666677788888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.1561352IPR005202Transcription factor GRAS
PfamPF035142.9E-286333IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MENKQPELAE MITGRISEKV SPTGEINNRL LYYAFQPIDK QSEYLKQESG KIFDRALEAF  60
YRIFPYGMVA HFAANSAILE TTSSLNPDVL HIVDFDIGEG VQWPPLILAL AQQQRRIPQI  120
NQNIQNPNFY YDTILPTTTM IKLTAINWRS EESLNSNCRR FESTKKQLQD YASSFGVTMR  180
IEEMEIQELK RSLKKGGKRC LTFNCMWGLP HMGRRRSKAQ VSEFLGLARE LLSQPGANGL  240
LTFSDGNGNN SSDRNNDCGF GGFFESYMAH YRAVLESMEW SFPARLPEAR LAMEYLFVAP  300
LIHSSEWGGK WGEEMAEEGS ELVSRLGFQP VTITAGDGLA EVREGGREGG SR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526658.11e-105nodulation-signaling pathway 2 protein
TrEMBLB9SKY91e-104B9SKY9_RICCO; Transcription factor, putative
STRINGLus100122370.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-10GRAS family protein