PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10012226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 35850.6 Da PI: 4.3036 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 62 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p+ g k+ r +lg+f ta eAa a+++a+++++g Lus10012226 62 CRYRGVRQRT-WGKWVAEIREPVLmTGstkKKgSRLWLGTFETAVEAAMAYDNAARSMYG 120 78*****999.**********999977796447************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 62 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-29 | 62 | 129 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 63 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.84 | 63 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-37 | 63 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-19 | 63 | 129 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-10 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MEDFSSIQKR TQRRRICGGD ESVEETLERW KKQTKLLKKK NPPKGSKKGC MRGKGGPENL 60 TCRYRGVRQR TWGKWVAEIR EPVLMTGSTK KKGSRLWLGT FETAVEAAMA YDNAARSMYG 120 GSAVLNFPNG VVNDDDQSNN PSSSPATETG TEISSASFDE GVVTMEELIK REVAEEEPEV 180 QNTKMMNGTE GVNLKDEGLD GELEEFMKYC SSWALNSNTE EEEEEEEERM VKLEEVNGNE 240 QTNSGGTTTT SDVAYHTDFG RETSLNPDVY PCGGSSFEEP FRIDTGVEWS GAEVIDWSMV 300 EGEPGVPPDM MLFHDPEFGF Y* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 64 | 128 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 30 | 38 | KKQTKLLKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10012226 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597142.1 | 1e-46 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_016465777.1 | 1e-46 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Swissprot | A2WL19 | 2e-43 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
STRING | Lus10012226 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38340.1 | 9e-33 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10012226 |