PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012210
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 287aa    MW: 32666.5 Da    PI: 7.7558
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012210genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-202877255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr++  +g+WvAeIr+p++   r r++lg+f taeeAa a+++a+++l+g
  Lus10012210 28 EYRGVRQRT-WGKWVAEIREPKK---RSRIWLGSFATAEEAAMAYDEAARRLYG 77
                 69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-282783No hitNo description
PROSITE profilePS5103222.4972885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302886IPR001471AP2/ERF domain
PfamPF008473.0E-132877IPR001471AP2/ERF domain
SMARTSM003807.3E-372891IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-212886IPR016177DNA-binding domain
PRINTSPR003671.8E-102940IPR001471AP2/ERF domain
PRINTSPR003671.8E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MENCRNSLKP WKRGPTRGKG GPLNATCEYR GVRQRTWGKW VAEIREPKKR SRIWLGSFAT  60
AEEAAMAYDE AARRLYGPEA YLNLPHLLQQ PPHHHHHHLS STTTAAFHRY RWMVPSSRTS  120
SVSSLFPPRG LLNLHAQPSV HVIHQRLQEL KDKKNNSQKN NTPPIIGLSQ DSRGAEPSTR  180
VPKAMEEAKE KPQIDLNEFL QQMGILKDEN RVAAADVPVE EEASRCYDNG ELIGSSSLSF  240
GEDKSLSYWD AFVSEDRGYY QGDNFQFLQD TVQEEELPFS AHIWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-172985663ATERF1
3gcc_A2e-172985663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012210
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904308.17e-89dehydration-responsive element-binding protein 2F
SwissprotQ9SVX56e-65DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2C9VDH62e-83A0A2C9VDH6_MANES; Uncharacterized protein
STRINGLus100122100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.16e-48ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]