PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10012102

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 297aa MW: 31728.3 Da PI: 6.6321

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10012102	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.7	1.6e-30	103	156	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Lus10012102 103 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 156 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-20	100	160	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	100	159	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-30	102	161	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-24	104	156	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	106	155	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MREDDSNWFA KWEEELPPPD ELMPISQTLI TPDLALAFDI RNHPMNQNHQ PPTPPVPPPP 60 SSSGNPSSIA ATSSEFAAEE SAEFGSNGNG GGADDDQART LKRPRLVWTP QLHKRFVDAV 120 AHLGIKNAVP KTIMQLMSVD GLTRENVASH LQKYRLYLKR MQGLSSGGGG GHGGGGGDSA 180 TDRLFASSPV PAHFLHPGGR PTSDHFLPFV PVTALQHHQQ MAAAAAAGVA HPQYHRQIGQ 240 FDHPFLARQA PPSQQQQQAV PRMGPPVQNV EDLESSAGNG NGGGRKALTL FPTAED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	5e-33	103	159	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10012102

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162796.1	1e-111	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	9e-63	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A059A3P3	1e-109	A0A059A3P3_EUCGR; Uncharacterized protein
STRING	Lus10012102	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8542	30	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	2e-68	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10012102

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]