PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 380aa MW: 42082.9 Da PI: 7.0008 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.3 | 3.1e-32 | 238 | 293 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+ eLH+rFv+a++qLGGs+ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Lus10012056 238 KQRRCWSAELHRRFVNALQQLGGSQAATPKQIREIMQVDGLTNDEVKSHLQKYRLH 293 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.518 | 235 | 295 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-17 | 236 | 296 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-29 | 236 | 297 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-27 | 238 | 293 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-7 | 240 | 291 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MDSVAPSELS FDSRTVSAKT MRNILLQNSP PPPAIGDSAA ANKVDSLLSE LQAEVTKIDS 60 FRNQLPLSML LLTDAIAAVK EWIDSSAGKK QKQVPVLEEF IPLKKSCGDD EDKECRVEEE 120 IKDSSKDKRS WMSSVQLWSS DDSVAAKRNP GLESKENKKG NGCRNEDAFS RKLKIEENGG 180 RDEDLGVPDL SLLTPGMKNF VEEFIATNSS RRVSQSDSQS DVRVVPHHHQ SPLQGSRKQR 240 RCWSAELHRR FVNALQQLGG SQAATPKQIR EIMQVDGLTN DEVKSHLQKY RLHTRRMTSA 300 PANQSLVVLG GGLWMSSQEQ HRECSKAASS QSNSPQGPLQ FSRTLTGGDS MEDDHEDDAK 360 SENYNSWKCH TQRPGRVGV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00193 | DAP | Transfer from AT1G49560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012056 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021651667.1 | 1e-106 | transcription factor HRS1-like isoform X1 | ||||
Refseq | XP_021651668.1 | 1e-106 | transcription factor HRS1-like isoform X2 | ||||
Refseq | XP_021651669.1 | 1e-106 | transcription factor HRS1-like isoform X3 | ||||
TrEMBL | A0A2I4KKE2 | 1e-100 | A0A2I4KKE2_POPTR; G2-like family protein | ||||
TrEMBL | A9PFU2 | 1e-100 | A9PFU2_POPTR; Uncharacterized protein | ||||
STRING | Lus10012056 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 3e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10012056 |