PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012046
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 417aa    MW: 46006.9 Da    PI: 9.5213
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012046genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-13153245698
                  ..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   6 tpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + ++v ++++l lp kfa+++     +kk +    +l  ++g ++e  ++  k +++ ++++GW++F ++n +k+  f++F+++g s+f  +v+vf+
  Lus10012046 153 IMPSVIEEKQLPLPIKFARKYgrklAMKKWS--NAQLCLPNGTVFEAGITAGKDRKELWFKRGWSKFMDDNSIKQDFFLTFEYTGGSRF--NVGVFN 245
                  4578899999***********9977556556..57888899********99999999***************************98999..999986 PP
2B333.95.5e-113304151498
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                   r+++p   +++ ++k    + l++    +  +e++l  + ++++ ++ +k+W  F +an+LkegD+++F+++ ++ ++fe +v++ r
  Lus10012046 330 YRITVPTGIVQKLKMKYGDRVNLKVSGGGSGGFEIEL--KHSGSSlTMVGKNWTAFYHANQLKEGDVCLFEVVeSSsNGFEIRVSISR 415
                  5677777777777666556555666665556666666..4454446899**********************77455688888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.75E-1118125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-1218125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.54224123IPR003340B3 DNA binding domain
CDDcd100171.97E-724121No hitNo description
SMARTSM010190.001825123IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-15144249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-15147248IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.516148247IPR003340B3 DNA binding domain
CDDcd100173.07E-12149245No hitNo description
SMARTSM010193.4E-9149247IPR003340B3 DNA binding domain
PfamPF023622.9E-11152245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-12309413IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-12310411IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-9313411No hitNo description
SMARTSM010190.51315413IPR003340B3 DNA binding domain
PROSITE profilePS508639.023317416IPR003340B3 DNA binding domain
PfamPF023622.3E-8330415IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAAAKHGGAS SSSSPLISSP PQQSFMRVIL PHVLQAKQMV MPQNFVGLYG SELLSTAELF  60
LPNGAIWTVG VAKRRNATGG WNEAYFGEKL AEFVGRHSIR TGFFLRFDYL GDSKFSVKIY  120
DTNCCGITYR SPSGPSAAGE VEDTSVENFF RLIMPSVIEE KQLPLPIKFA RKYGRKLAMK  180
KWSNAQLCLP NGTVFEAGIT AGKDRKELWF KRGWSKFMDD NSIKQDFFLT FEYTGGSRFN  240
VGVFNLSTCE ILYPPPPPPA VVNEDECEAL LAELAARGIE VASKFSCLTF PKISPESKTA  300
LRDAMANKRR DIPSFIVVMM PANQQLRTTY RITVPTGIVQ KLKMKYGDRV NLKVSGGGSG  360
GFEIELKHSG SSLTMVGKNW TAFYHANQLK EGDVCLFEVV ESSSNGFEIR VSISRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100120460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-18B3 family protein