PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 417aa MW: 46006.9 Da PI: 9.5213 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.6 | 2.2e-13 | 153 | 245 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++v ++++l lp kfa+++ +kk + +l ++g ++e ++ k +++ ++++GW++F ++n +k+ f++F+++g s+f +v+vf+ Lus10012046 153 IMPSVIEEKQLPLPIKFARKYgrklAMKKWS--NAQLCLPNGTVFEAGITAGKDRKELWFKRGWSKFMDDNSIKQDFFLTFEYTGGSRF--NVGVFN 245 4578899999***********9977556556..57888899********99999999***************************98999..999986 PP | |||||||
2 | B3 | 33.9 | 5.5e-11 | 330 | 415 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 r+++p +++ ++k + l++ + +e++l + ++++ ++ +k+W F +an+LkegD+++F+++ ++ ++fe +v++ r Lus10012046 330 YRITVPTGIVQKLKMKYGDRVNLKVSGGGSGGFEIEL--KHSGSSlTMVGKNWTAFYHANQLKEGDVCLFEVVeSSsNGFEIRVSISR 415 5677777777777666556555666665556666666..4454446899**********************77455688888888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.75E-11 | 18 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-12 | 18 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.542 | 24 | 123 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.97E-7 | 24 | 121 | No hit | No description |
SMART | SM01019 | 0.0018 | 25 | 123 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-15 | 144 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-15 | 147 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.516 | 148 | 247 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.07E-12 | 149 | 245 | No hit | No description |
SMART | SM01019 | 3.4E-9 | 149 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-11 | 152 | 245 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-12 | 309 | 413 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-12 | 310 | 411 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.94E-9 | 313 | 411 | No hit | No description |
SMART | SM01019 | 0.51 | 315 | 413 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.023 | 317 | 416 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-8 | 330 | 415 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MAAAKHGGAS SSSSPLISSP PQQSFMRVIL PHVLQAKQMV MPQNFVGLYG SELLSTAELF 60 LPNGAIWTVG VAKRRNATGG WNEAYFGEKL AEFVGRHSIR TGFFLRFDYL GDSKFSVKIY 120 DTNCCGITYR SPSGPSAAGE VEDTSVENFF RLIMPSVIEE KQLPLPIKFA RKYGRKLAMK 180 KWSNAQLCLP NGTVFEAGIT AGKDRKELWF KRGWSKFMDD NSIKQDFFLT FEYTGGSRFN 240 VGVFNLSTCE ILYPPPPPPA VVNEDECEAL LAELAARGIE VASKFSCLTF PKISPESKTA 300 LRDAMANKRR DIPSFIVVMM PANQQLRTTY RITVPTGIVQ KLKMKYGDRV NLKVSGGGSG 360 GFEIELKHSG SSLTMVGKNW TAFYHANQLK EGDVCLFEVV ESSSNGFEIR VSISRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012046 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10012046 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 3e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10012046 |