PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10011899 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 565aa MW: 61628.9 Da PI: 8.9445 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.6e-16 | 314 | 360 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Lus10011899 314 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 360 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 18.146 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.55E-16 | 313 | 364 | No hit | No description |
SuperFamily | SSF47459 | 8.77E-21 | 313 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-21 | 314 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-13 | 314 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-18 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MNHYVPDFEM DDDHSLPTPS SSNFNAHKKS SARSEDDIME LLWQNGQVVV QSQTQRSVKK 60 PSIGKEIRSS FHEHHRDPSP PHPAPHLFMQ EDEMASWLHY PLPETNFDQD FCADLLYSSA 120 PCITGVSATT TASAAAANSG PSLPAPPPAP SHVRSFANQH LAIPSTAAVA ALRPPIPPPP 180 RRPDAVQNFS LFSRHRGVAA AARGSMAAGS EQSNSKSVVK ESTVVDSSGT PAMLRQSSRV 240 SEAATVAVGS SCENVHGNGG GGGFFAAQRN EQPKLLRFLA DLRRMTRDAE FESAEEKKQA 300 RGSTSTKRSR AAEVHNLSER RRRDRINEKM KALQELIPRC NKSDKASMLD EAIEYLKSLQ 360 LQVQMMSMGC SMVPMMFPGV QQYMPPMGMG MGMGMGMGMG MGIDMGMNRP MMPFPNVLAG 420 APLQPAAHLG QRFPVPGFQM PPVMPPPDPS RVQAANQPDL MMSAQGGAPT MGQQQRPPSF 480 PDPYQQFLAL HQMQMPMQQN QPMPHPSMNK RSSSPGAEHG DGHQSGEEQR IRTYPRFTIN 540 NNGGDLRRFA GSQVPFSMPV RSFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 318 | 323 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10011899 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633340.1 | 1e-156 | transcription factor PIF1-like isoform X1 | ||||
Refseq | XP_021633341.1 | 1e-156 | transcription factor PIF1-like isoform X2 | ||||
TrEMBL | A0A251JFT0 | 1e-155 | A0A251JFT0_MANES; Uncharacterized protein | ||||
STRING | Lus10011899 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4607 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 1e-42 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Lus10011899 |