PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011899
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 565aa    MW: 61628.9 Da    PI: 8.9445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011899genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16314360455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Lus10011899 314 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 360
                  6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-16313364No hitNo description
SuperFamilySSF474598.77E-21313388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-21314371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13314360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MNHYVPDFEM DDDHSLPTPS SSNFNAHKKS SARSEDDIME LLWQNGQVVV QSQTQRSVKK  60
PSIGKEIRSS FHEHHRDPSP PHPAPHLFMQ EDEMASWLHY PLPETNFDQD FCADLLYSSA  120
PCITGVSATT TASAAAANSG PSLPAPPPAP SHVRSFANQH LAIPSTAAVA ALRPPIPPPP  180
RRPDAVQNFS LFSRHRGVAA AARGSMAAGS EQSNSKSVVK ESTVVDSSGT PAMLRQSSRV  240
SEAATVAVGS SCENVHGNGG GGGFFAAQRN EQPKLLRFLA DLRRMTRDAE FESAEEKKQA  300
RGSTSTKRSR AAEVHNLSER RRRDRINEKM KALQELIPRC NKSDKASMLD EAIEYLKSLQ  360
LQVQMMSMGC SMVPMMFPGV QQYMPPMGMG MGMGMGMGMG MGIDMGMNRP MMPFPNVLAG  420
APLQPAAHLG QRFPVPGFQM PPVMPPPDPS RVQAANQPDL MMSAQGGAPT MGQQQRPPSF  480
PDPYQQFLAL HQMQMPMQQN QPMPHPSMNK RSSSPGAEHG DGHQSGEEQR IRTYPRFTIN  540
NNGGDLRRFA GSQVPFSMPV RSFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318323ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011899
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633340.11e-156transcription factor PIF1-like isoform X1
RefseqXP_021633341.11e-156transcription factor PIF1-like isoform X2
TrEMBLA0A251JFT01e-155A0A251JFT0_MANES; Uncharacterized protein
STRINGLus100118990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-42phytochrome interacting factor 3-like 5