PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10011851

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 288aa MW: 32490.5 Da PI: 5.5277

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10011851	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.4	2.9e-16	27	120	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W+++e+ +Li ++++++++ +r+ l++p+Wee+s ++ + +s +qC++k+e+l++ry+ + ++++ s++p+f+ Lus10011851 27 WSQEETIQLILIYQQKWHANNRRHLRAPQWEEISTAVadrcgghndadpltsVSPEPAKSGIQCRHKMEKLRRRYRSELPRASS------SNWPFFSL 118 ***********************************************9987777789*************99888775......69**99 PP trihelix 85 le 86 ++ Lus10011851 119 MD 120 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.5E-16	27	122	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSSPSSPPPL PPPSTATAVK KPQPITWSQE ETIQLILIYQ QKWHANNRRH LRAPQWEEIS 60 TAVADRCGGH NDADPLTSVS PEPAKSGIQC RHKMEKLRRR YRSELPRASS SNWPFFSLMD 120 SMERGPISAR PLSEYHGEPV EEEDEEEDEA EEDYQSVYNN KSRSINHILR KPSVVNRFPG 180 NNYSGFLLQA AAAAAEGGGK RKRVEDEGIR AEEGEGIGGL LVVDEVKKLI EKMKGVERKK 240 MEMVKETERW RMEMEKQRME MMLASQRKIL QLIASSSASD DDGDDDS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10011851

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ885977	4e-70	HQ885977.1 Linum usitatissimum clone Contig1909 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10011851	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	5e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10011851