PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10011660

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 276aa MW: 31155.6 Da PI: 6.763

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10011660	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.4	4.4e-30	1	52	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Lus10011660 1 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 52 79*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	2.3E-22	1	52	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.5E-26	1	53	IPR009057	Homeodomain-like
Pfam	PF00249	6.2E-7	1	51	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.24E-14	1	53	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MRWTTTLHAH FVHAVQLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKSTDKSP 60 LPPGGGGHGL SHSSDDDNIN NYGEDAIIDL DAAKEEEEEE EGDGYRKLLA ADHQTDSPPQ 120 PTITQNVPRS SSIDRDSNNI RLSHPLTHSH NNGHDITTKE EKGGELRLTR TSEMLVNLEF 180 TLGRPSWQRD DVNSVAEPSN YDLTLLKYQV SPRRVDFTKA HLRPAQPHQQ PHLSQPVNKH 240 VEPSNYAAAW QSRKLRDEKI RDRRQCLCEK IDCQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-16	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-16	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-16	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-16	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10011660

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021683422.1	2e-45	probable transcription factor KAN4
TrEMBL	A0A2H5NGW7	4e-43	A0A2H5NGW7_CITUN; Uncharacterized protein
TrEMBL	I1M8H7	3e-43	I1M8H7_SOYBN; Uncharacterized protein
TrEMBL	V4V7S2	4e-43	V4V7S2_9ROSI; Uncharacterized protein
STRING	Lus10011660	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4463	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	1e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10011660