PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011546
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 295aa    MW: 31795.7 Da    PI: 10.5329
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011546genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI    +       R+  ++k++w++
      Lus10011546  5 KQKWTAEEETALKAGVVKHGTGKWRTILMDPQfssvlRLRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.594161IPR017930Myb domain
SuperFamilySSF466893.89E-15262IPR009057Homeodomain-like
SMARTSM007171.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-12456IPR009057Homeodomain-like
PfamPF002493.8E-8555IPR001005SANT/Myb domain
CDDcd116601.18E-18657No hitNo description
SMARTSM005262.6E-16122188IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.703124193IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467859.8E-14125201IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.8E-8126186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.9E-12126195IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTA EEETALKAGV VKHGTGKWRT ILMDPQFSSV LRLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKGGGSLTP KRVESSSTPT SVIHYNEEFA AAAADPKPLA ISGGTLLSRG  120
SKELLPKLGS LILEAITTLR EPSGSDRTSI AMYIEDRKLL AVPNLRKLLA GKLKLLTASG  180
KLVKVKHKYR IAPSSQISEG LKSSPLKNTL TLENISTKIV TKSQVQQEIL RIQGVTAEEA  240
AAAAAKAVAE AEVAIAEAAE ASREAERAEA EAEACQVFAE AAKKAYRYRA RQSW*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633738.11e-105telomere repeat-binding factor 2
RefseqXP_021633739.11e-105telomere repeat-binding factor 2
SwissprotQ9FJW53e-61TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A251JI531e-104A0A251JI53_MANES; Uncharacterized protein
TrEMBLA0A251JIW01e-103A0A251JIW0_MANES; Uncharacterized protein
STRINGLus100115460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.22e-50MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]