PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011445
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 374aa    MW: 41893.3 Da    PI: 5.479
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011445genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.4e-1187128344
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                  + k++rr+++NReAAr+sR RKka++++Le    +L +  ++
  Lus10011445  87 SEKVQRRLAQNREAARKSRIRKKAYVKQLESSRLKLIQLEQE 128
                  6799**************************866655555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-883133No hitNo description
SMARTSM003384.5E-685148IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.02587131IPR004827Basic-leucine zipper domain
PfamPF001704.3E-788121IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-789132No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
PfamPF141441.1E-28175250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNSSPTQFVA SGGGMELYDH VHQLSMWGEN LFKSNGSPNA LASILIPNTS PSLFISPDIK  60
FDNQSEDTSH GTPGVLTNYE QEVTKSSEKV QRRLAQNREA ARKSRIRKKA YVKQLESSRL  120
KLIQLEQELD KARQQGSYID NAVEGSNVGF SSAMNSGIAM FETEYVNWLE EQQRHVCELR  180
TALNSDISDG EIHVLVDASL NHYYELFRMK AAASKADVFY VMYGLWKSSA ERFFLWIGGF  240
RPSELIKVLR PQIEPLAEPQ LQDICNLGQL CQQAEDALSQ GMERLQQTLA QSVADGQLGE  300
AIYSPQIDTA MEKLDSLVRF VRQADHLRKV ALVQVSQILT PTQAARGLLA LGEYFDKLRA  360
LSQVWETNVR EPS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00642SELEXTransfer from LOC107771743Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011445
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075186.10.0transcription factor TGA1
RefseqXP_020535956.10.0transcription factor TGA1
RefseqXP_020535957.10.0transcription factor TGA1
SwissprotQ392371e-157TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A067KGJ60.0A0A067KGJ6_JATCU; Uncharacterized protein
STRINGLus100114450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-159bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]