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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10011352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1077aa MW: 120831 Da PI: 6.7548 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 166.2 | 5.5e-52 | 196 | 311 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 l+e ++rwlk+ e+ iL+n+ek+++t++++ rp+ gsl+Lyn++++r+frkD ++w+kkkdg+tv E+hekLKvg+ve l+cyYah+ee p+fqrr+ Lus10011352 196 LQEaQHRWLKPVEVFFILQNHEKYKFTEKTPIRPSAGSLFLYNKRVTRFFRKDDHNWRKKKDGRTVAEAHEKLKVGNVERLNCYYAHGEEIPHFQRRS 293 56669********************************************************************************************* PP CG-1 99 ywlLeeelekivlvhyle 116 yw+Le ++++vlvhy++ Lus10011352 294 YWMLEPPYDHVVLVHYRD 311 ****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.123 | 192 | 318 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.1E-66 | 195 | 313 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.3E-44 | 198 | 311 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.3E-5 | 503 | 592 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 9.33E-15 | 506 | 590 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.1E-6 | 506 | 590 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 1.6E-15 | 701 | 798 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.043 | 703 | 795 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.44E-16 | 705 | 798 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.11E-13 | 723 | 795 | No hit | No description |
Pfam | PF12796 | 1.9E-7 | 730 | 797 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.22 | 736 | 768 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4.6E-5 | 736 | 765 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 780 | 775 | 804 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 28 | 855 | 877 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.187 | 856 | 885 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 7.43E-7 | 858 | 878 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 41 | 909 | 931 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 7.43E-7 | 910 | 962 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.272 | 912 | 939 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.11 | 913 | 930 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 3.2E-5 | 932 | 954 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.993 | 933 | 957 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.3E-5 | 935 | 954 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1077 aa Download sequence Send to blast |
MMRRQQQQQD QHSRAFHELT NMVFNLLRSP PTPIQFSDHF PAAVSSSPPP RSLRSAKITP 60 AGFASLLLGV SLAMMLCGSV TFFIGFILMP WVLGLVMVFY VAGIVSMIAM LGRSLLCFAA 120 GPPPPPRKDI PVFLWIIRFQ LSNENLGVLI GERLTESKTL YLSSRILEMT RIVSRLFPII 180 VNQPGPDQGY DINQLLQEAQ HRWLKPVEVF FILQNHEKYK FTEKTPIRPS AGSLFLYNKR 240 VTRFFRKDDH NWRKKKDGRT VAEAHEKLKV GNVERLNCYY AHGEEIPHFQ RRSYWMLEPP 300 YDHVVLVHYR DINEGITPSG SLVQSTPGAS SHLGPSPSYN TTPNQGSTQP ISNSYEPYTN 360 SSSPGSTEVT SEILIKGNEG FSTTKFAAEK NDVNQYLRSL KKNLSLDDDM VTGLDLFDEG 420 PLNHGYDDAF EQEKMTSALK TEPVEEFQHS QWLNFDQINY GAAAAVSGPG VGKSEVRDVN 480 LDSYGMPFSH GQADSRLAIA QHNKFTIRKI SPEWGYCNEI TKVLIVGFFL CDPSESAWTC 540 MFGDKEVPLE IIQEGVLQCA TPLEMPPGKV SICITSGNRQ PCSEIGQFEF RNKSSCDIVH 600 QLLERSAEEM LSLVRLVEML LSGSSLPKLN DEESGLDQPG ILKLQSDEDS WVQVIEALLV 660 GNGTSSDTVY WLLEQLLKDK LHRWLSSKYN RFDYQDGCLL SKKEQGIIHM VAGLGFEWAL 720 TPILNHGLSV DFRDINGWTA LHWAARFGRE KMVAALIASG ASPRAVTDPS SQDPAGKTPA 780 SIAAINGHHG LAGYLSELAL TTHLSSLTLE ESELSKGSAE VEAERTVVDS ISNVNFPASF 840 EDQVSINTTL AAVRNSAQAA ARIQSAFRAH SFRKRQQRET AVRDEYGIPS SEIQELSALS 900 KMAFGNARDY GTAALSIQKK YRGWKNRQDF LTLKKKVVKI QAHVRGYQVR KHYRVICWAV 960 GIIDKVVLRW RRKGAGLRNF RNKAEQPIVE DEESDEDILK VFRKQKVDGA IDEAVSRVLS 1020 MVHSPDARDQ YQRMLERYKQ AKAELATTSE AGTLDQPDNT NNEFEMDDED LQQYFQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10011352 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229867.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X3 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A1Q3DAL6 | 0.0 | A0A1Q3DAL6_CEPFO; IQ domain-containing protein/TIG domain-containing protein/CG-1 domain-containing protein/Ank_2 domain-containing protein | ||||
STRING | Lus10011352 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4548 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Lus10011352 |
Publications ? help Back to Top | |||
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