PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10011307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 40905.8 Da PI: 6.5936 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.3e-08 | 214 | 261 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++ Lq Lus10011307 214 SHSLAERARREKINARMKFLQELVPGC----SKITGTALVLDEIINHVQTLQ 261 8*************************9....788999999999999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.09E-8 | 208 | 265 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-15 | 208 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.405 | 210 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 210 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 214 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-6 | 216 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
METLSGAGAR SGPAGNETAV LDFSDDIRHL IISAPNETAS SFTALLELPP NQAMELLHNP 60 SRPGVEQQYR SHHINRQHQL PQQFNAELLT FPTNAALIER AAKFSVFAAE EDMRKSTTAT 120 IDPSHDDDGD DSGANVLRKA VVVKSEPAET ASRLNSLPTV AKNDENRRQG AKRKEQERKV 180 KAYSKKSKCT AKEDSGEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM KFLQELVPGC 240 SKITGTALVL DEIINHVQTL QRQVEVLSMK LAAVNPRIDF NLDAILAADS GSLTDSNFPA 300 IMMPILWPAE VQGSANMQQY QQWSFDATHP EAWGRENDHN FVVTPENSLL SYVSSANSVS 360 LNSNQLKMEL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10011307 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621235.1 | 1e-131 | transcription factor bHLH48-like | ||||
Swissprot | Q8VZ02 | 8e-95 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A2C9VDG6 | 1e-130 | A0A2C9VDG6_MANES; Uncharacterized protein | ||||
STRING | Lus10011307 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4985 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-92 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10011307 |
Publications ? help Back to Top | |||
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