PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011303
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 444aa    MW: 49219.4 Da    PI: 9.0923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011303genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2232e-07309365154
          AP2   1 sgykGVrwdkkrgr......WvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                  s+y+GV++++          W+A +        +   r slgkf t++eAa+a++ a+ k  
  Lus10011303 309 SQYRGVTFKRPADDnpqkikWEAKLETT-----TdfPRLSLGKFETEKEAARAYDIAAIKVS 365
                  67889977554333455577**998774.....2459*********99*********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.839103163IPR001471AP2/ERF domain
SMARTSM003801.7E-4103169IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-7129164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-10129163IPR001471AP2/ERF domain
CDDcd000182.92E-13309373No hitNo description
PROSITE profilePS5103215.303310374IPR001471AP2/ERF domain
SMARTSM003804.0E-11310380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-13310374IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-9310375IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNAYNRSVDP QLYSSICDGS IFNSSIFKKS IFDKTDVTEI KNVNYHGVTR FIYVTNTADV  60
AMAARFHDLL ALKIFGTSTA LNFPVTGYEE DLKQMKNMSK HEYIKSLKKR PADGNPHNIL  120
WEVKLENFPR LPLGQFETEK EAARAYDIAA IKVNGRKATT NFGIQHYNVN RIIDSTSLPS  180
GSKGAYTNRA NIVLLRECVV NRANSPADFA DDQPPAQDAA SQAEQPAIAT PDNIAAGEGS  240
CGVMSMKDRN FSANGGTPVL EPRLTSTSHQ RVARVIDYKE ELEMMKNMSK DEYIKSLKKL  300
TRANTRRVSQ YRGVTFKRPA DDNPQKIKWE AKLETTTDFP RLSLGKFETE KEAARAYDIA  360
AIKVSGRKAT TNFGIEQYHV NQIIDDTSLT GYKYWVNKVL LRNCVINRAN SPADFADDQP  420
QARDAVAAPD NAAGEGSSGA MSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100113030.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-24AP2 family protein