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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10011185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HSF | ||||||||
Protein Properties | Length: 205aa MW: 23782.9 Da PI: 9.7601 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.8 | 5.5e-36 | 33 | 123 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++le+++ ++isw+e+g+ fvv+ + ef++++Lp+yFkh+nf+SF+RQLn+YgF+kv++++ weFkh++F++g++++l +i Lus10011185 33 FLSKTYDLLEERSEGRIISWNEDGSGFVVWSPAEFSEQMLPRYFKHNNFSSFIRQLNTYGFRKVSSKR---------WEFKHDKFRRGDRDMLVEIA 120 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 rk+ Lus10011185 121 RKR 123 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-37 | 29 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.3E-48 | 29 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.03E-31 | 29 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.3E-32 | 33 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-18 | 33 | 56 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-18 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 72 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-18 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MNTVSGYPAA MDVNQAAAAA STGRGLVRGP APFLSKTYDL LEERSEGRII SWNEDGSGFV 60 VWSPAEFSEQ MLPRYFKHNN FSSFIRQLNT YGFRKVSSKR WEFKHDKFRR GDRDMLVEIA 120 RKRCEPSAFP SYLKAANSNE ETSENDHHKR NIRLMMMEEN SNLRKEKLEL ETQIAEFRDL 180 KLKLLDFVGQ YVQKDQQVKN RRTC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 1e-21 | 30 | 122 | 3 | 105 | Heat shock factor protein 2 |
5d8l_B | 1e-21 | 30 | 122 | 3 | 105 | Heat shock factor protein 2 |
5d8l_D | 1e-21 | 30 | 122 | 3 | 105 | Heat shock factor protein 2 |
5d8l_F | 1e-21 | 30 | 122 | 3 | 105 | Heat shock factor protein 2 |
5d8l_H | 1e-21 | 30 | 122 | 3 | 105 | Heat shock factor protein 2 |
5hdk_A | 1e-21 | 30 | 122 | 8 | 110 | Heat shock factor protein 2 |
5hdk_B | 1e-21 | 30 | 122 | 8 | 110 | Heat shock factor protein 2 |
5hdk_C | 1e-21 | 30 | 122 | 8 | 110 | Heat shock factor protein 2 |
5hdk_D | 1e-21 | 30 | 122 | 8 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10011185 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506614.1 | 2e-76 | heat stress transcription factor B-2a | ||||
Refseq | XP_023877712.1 | 1e-76 | heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A1S3UKY9 | 4e-75 | A0A1S3UKY9_VIGRR; heat stress transcription factor B-2a | ||||
STRING | Lus10011185 | 1e-153 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 8e-43 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Lus10011185 |